miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 13455 0.71 0.387118
Target:  5'- aCGGUCGUgcgcaccgCGUCGCGAAuGCGCaGGCg -3'
miRNA:   3'- aGCUAGCG--------GCGGUGCUUuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 47211 0.71 0.377343
Target:  5'- --aGUCGCCGCgACGGgcGCGCuacuuucGAGCg -3'
miRNA:   3'- agcUAGCGGCGgUGCUuuCGCG-------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 46351 0.73 0.28254
Target:  5'- cCGuuaugCGCCGCUGCGGAuuuGGCGCG-GCc -3'
miRNA:   3'- aGCua---GCGGCGGUGCUU---UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 29014 0.76 0.1763
Target:  5'- aUCGcgCGCgGCuagCACGAuaaccAGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCGgCG---GUGCUu----UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 12410 0.69 0.462988
Target:  5'- --uGUCGCCGCCuuCGGccAAGCGCuggacguagguGAGCa -3'
miRNA:   3'- agcUAGCGGCGGu-GCU--UUCGCG-----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 47818 0.7 0.405314
Target:  5'- -aGcgCGCCGCCuGCGGAcGGCGCuucuuuggagguGAGCa -3'
miRNA:   3'- agCuaGCGGCGG-UGCUU-UCGCG------------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 4085 0.71 0.369469
Target:  5'- gCGAagUCGCCGCCcuuacCGAGcgGGCGCGAc- -3'
miRNA:   3'- aGCU--AGCGGCGGu----GCUU--UCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 28758 0.76 0.171585
Target:  5'- gCGAgCGCCGCguCGAccGCGCGGGUc -3'
miRNA:   3'- aGCUaGCGGCGguGCUuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 38367 0.71 0.396149
Target:  5'- aUCGAcgCGCUGUCGCGugucGGGUGCGccGGCg -3'
miRNA:   3'- -AGCUa-GCGGCGGUGCu---UUCGCGC--UCG- -5'
17040 3' -55.9 NC_004333.2 + 43577 0.79 0.110169
Target:  5'- gUCGcgCGCuCGCCucgaacGCGAGuGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCG-GCGG------UGCUUuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 25473 0.71 0.369469
Target:  5'- -gGAUCGUCGCgGCGAcAGC-CGGGUu -3'
miRNA:   3'- agCUAGCGGCGgUGCUuUCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 38427 0.71 0.393426
Target:  5'- aUCGAgacgcUUGCCGCguCGAAcuuugucgauccguGGCGCGAcGCg -3'
miRNA:   3'- -AGCU-----AGCGGCGguGCUU--------------UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 9445 0.72 0.319904
Target:  5'- cCGGuUCGCCGUCcuGCGcaccAGGCGCGGGUg -3'
miRNA:   3'- aGCU-AGCGGCGG--UGCu---UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 2495 0.73 0.297056
Target:  5'- aUCGA-CGCUGCCuCGAGaucgGGCGCGAcGUa -3'
miRNA:   3'- -AGCUaGCGGCGGuGCUU----UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 6589 0.75 0.224128
Target:  5'- cCGcAUCGCCGCCACG---GCGCGccgcccAGCg -3'
miRNA:   3'- aGC-UAGCGGCGGUGCuuuCGCGC------UCG- -5'
17040 3' -55.9 NC_004333.2 + 32756 0.76 0.18113
Target:  5'- -aGGUCGCUGCCGcCGGccauAAGCGCG-GCa -3'
miRNA:   3'- agCUAGCGGCGGU-GCU----UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 18804 0.69 0.483153
Target:  5'- aUCG--CGCgGCCGC-AGGGCGCGuGCu -3'
miRNA:   3'- -AGCuaGCGgCGGUGcUUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 31230 0.69 0.462988
Target:  5'- cCGGUCGCgacgGCCGCGc-GGCGC-AGCg -3'
miRNA:   3'- aGCUAGCGg---CGGUGCuuUCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 19787 0.7 0.433594
Target:  5'- -gGAUCGU-GCCGCGcguuGAGUGCGAuGCg -3'
miRNA:   3'- agCUAGCGgCGGUGCu---UUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 9578 0.7 0.414612
Target:  5'- uUCG-UUGCCGCCACcuucAGCGCcAGCc -3'
miRNA:   3'- -AGCuAGCGGCGGUGcuu-UCGCGcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.