Results 41 - 60 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 2413 | 0.69 | 0.453072 |
Target: 5'- cUGGUCGCCGUacaGCGgcAGCGUGccuugguacGGCg -3' miRNA: 3'- aGCUAGCGGCGg--UGCuuUCGCGC---------UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 4085 | 0.71 | 0.369469 |
Target: 5'- gCGAagUCGCCGCCcuuacCGAGcgGGCGCGAc- -3' miRNA: 3'- aGCU--AGCGGCGGu----GCUU--UCGCGCUcg -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28758 | 0.76 | 0.171585 |
Target: 5'- gCGAgCGCCGCguCGAccGCGCGGGUc -3' miRNA: 3'- aGCUaGCGGCGguGCUuuCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 1276 | 0.69 | 0.453072 |
Target: 5'- -gGcgCGCCGCCugGc--GCGCGuuGCg -3' miRNA: 3'- agCuaGCGGCGGugCuuuCGCGCu-CG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 43577 | 0.79 | 0.110169 |
Target: 5'- gUCGcgCGCuCGCCucgaacGCGAGuGCGCGAGCa -3' miRNA: 3'- -AGCuaGCG-GCGG------UGCUUuCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 13593 | 0.68 | 0.545953 |
Target: 5'- cCGAUCGCuuCGCCccaaguGCGGAuGCacucgucgGCGAGCa -3' miRNA: 3'- aGCUAGCG--GCGG------UGCUUuCG--------CGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 32756 | 0.76 | 0.18113 |
Target: 5'- -aGGUCGCUGCCGcCGGccauAAGCGCG-GCa -3' miRNA: 3'- agCUAGCGGCGGU-GCU----UUCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 46862 | 0.68 | 0.53528 |
Target: 5'- aUCGA-CGCCGUgcgcuCGAAAGaaaccgagugcCGCGAGCg -3' miRNA: 3'- -AGCUaGCGGCGgu---GCUUUC-----------GCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 4635 | 0.68 | 0.524681 |
Target: 5'- aUUGAgCGCCaUCGCGAucauGGCGaCGGGCa -3' miRNA: 3'- -AGCUaGCGGcGGUGCUu---UCGC-GCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29831 | 0.68 | 0.511024 |
Target: 5'- aUCGccgCGCCGCCAgucgacugaucguuCGcagcGAAGCGCGcGCg -3' miRNA: 3'- -AGCua-GCGGCGGU--------------GC----UUUCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 11327 | 0.69 | 0.493393 |
Target: 5'- cUGGUCGCgCGCgAUGAAGGCgGCGcGGUu -3' miRNA: 3'- aGCUAGCG-GCGgUGCUUUCG-CGC-UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 18804 | 0.69 | 0.483153 |
Target: 5'- aUCG--CGCgGCCGC-AGGGCGCGuGCu -3' miRNA: 3'- -AGCuaGCGgCGGUGcUUUCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 31230 | 0.69 | 0.462988 |
Target: 5'- cCGGUCGCgacgGCCGCGc-GGCGC-AGCg -3' miRNA: 3'- aGCUAGCGg---CGGUGCuuUCGCGcUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 36300 | 0.7 | 0.424039 |
Target: 5'- gCGAUacgCGCCGCC-CGAGuAGuCGcCGGGCg -3' miRNA: 3'- aGCUA---GCGGCGGuGCUU-UC-GC-GCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 38367 | 0.71 | 0.396149 |
Target: 5'- aUCGAcgCGCUGUCGCGugucGGGUGCGccGGCg -3' miRNA: 3'- -AGCUa-GCGGCGGUGCu---UUCGCGC--UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 13455 | 0.71 | 0.387118 |
Target: 5'- aCGGUCGUgcgcaccgCGUCGCGAAuGCGCaGGCg -3' miRNA: 3'- aGCUAGCG--------GCGGUGCUUuCGCGcUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 47211 | 0.71 | 0.377343 |
Target: 5'- --aGUCGCCGCgACGGgcGCGCuacuuucGAGCg -3' miRNA: 3'- agcUAGCGGCGgUGCUuuCGCG-------CUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 9445 | 0.72 | 0.319904 |
Target: 5'- cCGGuUCGCCGUCcuGCGcaccAGGCGCGGGUg -3' miRNA: 3'- aGCU-AGCGGCGG--UGCu---UUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 2495 | 0.73 | 0.297056 |
Target: 5'- aUCGA-CGCUGCCuCGAGaucgGGCGCGAcGUa -3' miRNA: 3'- -AGCUaGCGGCGGuGCUU----UCGCGCU-CG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 6589 | 0.75 | 0.224128 |
Target: 5'- cCGcAUCGCCGCCACG---GCGCGccgcccAGCg -3' miRNA: 3'- aGC-UAGCGGCGGUGCuuuCGCGC------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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