miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 31230 0.69 0.462988
Target:  5'- cCGGUCGCgacgGCCGCGc-GGCGC-AGCg -3'
miRNA:   3'- aGCUAGCGg---CGGUGCuuUCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 40860 0.69 0.483153
Target:  5'- cUGGUCGCCgGCgAUGGucGCGCGAc- -3'
miRNA:   3'- aGCUAGCGG-CGgUGCUuuCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 32349 0.76 0.191141
Target:  5'- -gGGUCGCUGCC-CGAuAGCGUGcGCa -3'
miRNA:   3'- agCUAGCGGCGGuGCUuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 168 0.74 0.261828
Target:  5'- aCGAUCGgCGCCu----GGCGCGAGUc -3'
miRNA:   3'- aGCUAGCgGCGGugcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 14806 0.73 0.297056
Target:  5'- aUCuuUCGCCG-CACGc--GCGCGAGCa -3'
miRNA:   3'- -AGcuAGCGGCgGUGCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 27533 0.72 0.335855
Target:  5'- gUCGAUCGCaaguGCCGCGccGGgGCGAaucuGCg -3'
miRNA:   3'- -AGCUAGCGg---CGGUGCuuUCgCGCU----CG- -5'
17040 3' -55.9 NC_004333.2 + 29051 0.71 0.378224
Target:  5'- ----gCGCCGcCCACGAucGCGcCGAGUu -3'
miRNA:   3'- agcuaGCGGC-GGUGCUuuCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 38427 0.71 0.393426
Target:  5'- aUCGAgacgcUUGCCGCguCGAAcuuugucgauccguGGCGCGAcGCg -3'
miRNA:   3'- -AGCU-----AGCGGCGguGCUU--------------UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 47818 0.7 0.405314
Target:  5'- -aGcgCGCCGCCuGCGGAcGGCGCuucuuuggagguGAGCa -3'
miRNA:   3'- agCuaGCGGCGG-UGCUU-UCGCG------------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 18600 0.7 0.433594
Target:  5'- ----aCGaCCGgCGCGGcAGGCGCGGGCg -3'
miRNA:   3'- agcuaGC-GGCgGUGCU-UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 13887 0.67 0.622116
Target:  5'- gCGAagUCgGCCGgCACGGGcuGCGCG-GCg -3'
miRNA:   3'- aGCU--AG-CGGCgGUGCUUu-CGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 40027 0.67 0.600178
Target:  5'- cUCGcgCGgCGCCACG---GCGCGGacGCc -3'
miRNA:   3'- -AGCuaGCgGCGGUGCuuuCGCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 47318 0.69 0.503731
Target:  5'- cUCGcaagCGCCG-CACGAAAGC-CGAGa -3'
miRNA:   3'- -AGCua--GCGGCgGUGCUUUCGcGCUCg -5'
17040 3' -55.9 NC_004333.2 + 29413 0.68 0.514163
Target:  5'- cCGuUCGCCGUCGCG---GCGCuGGCu -3'
miRNA:   3'- aGCuAGCGGCGGUGCuuuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 46862 0.68 0.53528
Target:  5'- aUCGA-CGCCGUgcgcuCGAAAGaaaccgagugcCGCGAGCg -3'
miRNA:   3'- -AGCUaGCGGCGgu---GCUUUC-----------GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 13593 0.68 0.545953
Target:  5'- cCGAUCGCuuCGCCccaaguGCGGAuGCacucgucgGCGAGCa -3'
miRNA:   3'- aGCUAGCG--GCGG------UGCUUuCG--------CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 15271 0.67 0.567494
Target:  5'- aCGAUUuGCCguGCUGCGgcGGCGCGgucAGCa -3'
miRNA:   3'- aGCUAG-CGG--CGGUGCuuUCGCGC---UCG- -5'
17040 3' -55.9 NC_004333.2 + 9718 0.67 0.578347
Target:  5'- gCGGuUCGCgaaaCGCCGCGucGGCGacauGAGCg -3'
miRNA:   3'- aGCU-AGCG----GCGGUGCuuUCGCg---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 31095 0.67 0.589244
Target:  5'- uUCGG-CGCCugGCC-CGucagcGGCGCGAGUu -3'
miRNA:   3'- -AGCUaGCGG--CGGuGCuu---UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 40708 0.67 0.589244
Target:  5'- cCGAUCGCCGCgAuCGucaccGGCgGCG-GCa -3'
miRNA:   3'- aGCUAGCGGCGgU-GCuu---UCG-CGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.