miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 22003 0.68 0.514163
Target:  5'- ----gCGUCGgCGCGAAucagcGCGCGGGCg -3'
miRNA:   3'- agcuaGCGGCgGUGCUUu----CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 14329 0.68 0.524681
Target:  5'- cCGuUCGCCGCCucuuCGAuguagacGCGCGAcacgGCg -3'
miRNA:   3'- aGCuAGCGGCGGu---GCUuu-----CGCGCU----CG- -5'
17040 3' -55.9 NC_004333.2 + 13765 0.68 0.545953
Target:  5'- cCGcgCGCCGCuCGCGc-GGCGUGuAGUu -3'
miRNA:   3'- aGCuaGCGGCG-GUGCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 47716 0.68 0.556694
Target:  5'- aCGcUCGCCGgCACGuc-GCGCGccguGGCc -3'
miRNA:   3'- aGCuAGCGGCgGUGCuuuCGCGC----UCG- -5'
17040 3' -55.9 NC_004333.2 + 26631 0.67 0.567494
Target:  5'- gUUGAUCGuugucgcaCCGCCGCucguGAGCGUGAucGCg -3'
miRNA:   3'- -AGCUAGC--------GGCGGUGcu--UUCGCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 31095 0.67 0.589244
Target:  5'- uUCGG-CGCCugGCC-CGucagcGGCGCGAGUu -3'
miRNA:   3'- -AGCUaGCGG--CGGuGCuu---UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 40708 0.67 0.589244
Target:  5'- cCGAUCGCCGCgAuCGucaccGGCgGCG-GCa -3'
miRNA:   3'- aGCUAGCGGCGgU-GCuu---UCG-CGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 18600 0.7 0.433594
Target:  5'- ----aCGaCCGgCGCGGcAGGCGCGGGCg -3'
miRNA:   3'- agcuaGC-GGCgGUGCU-UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47818 0.7 0.405314
Target:  5'- -aGcgCGCCGCCuGCGGAcGGCGCuucuuuggagguGAGCa -3'
miRNA:   3'- agCuaGCGGCGG-UGCUU-UCGCG------------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 38427 0.71 0.393426
Target:  5'- aUCGAgacgcUUGCCGCguCGAAcuuugucgauccguGGCGCGAcGCg -3'
miRNA:   3'- -AGCU-----AGCGGCGguGCUU--------------UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 45421 0.67 0.622116
Target:  5'- cUCGGUUucgGCgGCgGCGAcGGCgcauucGCGAGCa -3'
miRNA:   3'- -AGCUAG---CGgCGgUGCUuUCG------CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30054 0.66 0.633103
Target:  5'- cUGAUCGaCCG-UGCcAAAGCGCGGGUc -3'
miRNA:   3'- aGCUAGC-GGCgGUGcUUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9350 0.66 0.655065
Target:  5'- cUCG-UCGUCGgCGCGc-GGCGuCGGGCc -3'
miRNA:   3'- -AGCuAGCGGCgGUGCuuUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 32806 0.66 0.664925
Target:  5'- gUCGAgcgguUCGCgaucagucaggaaCGCCACGugcaacauGAGCGCG-GCc -3'
miRNA:   3'- -AGCU-----AGCG-------------GCGGUGCu-------UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 28979 0.66 0.676942
Target:  5'- gCGAUCaguugcgcgGCCGCCGgGucGGCGUGcGCn -3'
miRNA:   3'- aGCUAG---------CGGCGGUgCuuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32349 0.76 0.191141
Target:  5'- -gGGUCGCUGCC-CGAuAGCGUGcGCa -3'
miRNA:   3'- agCUAGCGGCGGuGCUuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 168 0.74 0.261828
Target:  5'- aCGAUCGgCGCCu----GGCGCGAGUc -3'
miRNA:   3'- aGCUAGCgGCGGugcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 14806 0.73 0.297056
Target:  5'- aUCuuUCGCCG-CACGc--GCGCGAGCa -3'
miRNA:   3'- -AGcuAGCGGCgGUGCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 27533 0.72 0.335855
Target:  5'- gUCGAUCGCaaguGCCGCGccGGgGCGAaucuGCg -3'
miRNA:   3'- -AGCUAGCGg---CGGUGCuuUCgCGCU----CG- -5'
17040 3' -55.9 NC_004333.2 + 29051 0.71 0.378224
Target:  5'- ----gCGCCGcCCACGAucGCGcCGAGUu -3'
miRNA:   3'- agcuaGCGGC-GGUGCUuuCGC-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.