miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 28662 0.68 0.524681
Target:  5'- -gGAUCGCgGUCGCaGAAuuccGGUGCGuGCu -3'
miRNA:   3'- agCUAGCGgCGGUG-CUU----UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 14329 0.68 0.524681
Target:  5'- cCGuUCGCCGCCucuuCGAuguagacGCGCGAcacgGCg -3'
miRNA:   3'- aGCuAGCGGCGGu---GCUuu-----CGCGCU----CG- -5'
17040 3' -55.9 NC_004333.2 + 44552 0.67 0.622116
Target:  5'- -aGGUCGaCUGCUACGGcccgcAGGCGCccgacuGGGCg -3'
miRNA:   3'- agCUAGC-GGCGGUGCU-----UUCGCG------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 15721 0.68 0.524681
Target:  5'- gCGGcUCGUCGCgGCGcugaAGGGCGcCGAGUa -3'
miRNA:   3'- aGCU-AGCGGCGgUGC----UUUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 18283 0.69 0.483153
Target:  5'- cCGcgCGCgGCC-CGAucGCGC-AGCg -3'
miRNA:   3'- aGCuaGCGgCGGuGCUuuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 38828 0.66 0.684564
Target:  5'- cCGA-CGCCGCgcgccgacgacgagCAUGAAAGUGCcgaagacaacGAGCu -3'
miRNA:   3'- aGCUaGCGGCG--------------GUGCUUUCGCG----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 20989 0.68 0.514163
Target:  5'- aCGGUCuGCCGCCACaccu-CGgGGGCa -3'
miRNA:   3'- aGCUAG-CGGCGGUGcuuucGCgCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9769 0.69 0.493393
Target:  5'- cUCGAUCGCCGUCuuGAccGUgGCcGGCg -3'
miRNA:   3'- -AGCUAGCGGCGGugCUuuCG-CGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 28289 0.69 0.503731
Target:  5'- -gGAUgGCCcagaGCUGCu-GAGCGCGGGCg -3'
miRNA:   3'- agCUAgCGG----CGGUGcuUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 15761 0.68 0.514163
Target:  5'- cUCGucaGCgaGCUGCGcGAGGCGCGGGCc -3'
miRNA:   3'- -AGCuagCGg-CGGUGC-UUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 4718 0.69 0.473016
Target:  5'- uUCGAUUGCgGCgCGCaAgcGCGCGAuGCg -3'
miRNA:   3'- -AGCUAGCGgCG-GUGcUuuCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 6466 0.68 0.523625
Target:  5'- gUUGAUCgcgccguGCCGCC-CGAAGuugccgcccGCGuCGAGCa -3'
miRNA:   3'- -AGCUAG-------CGGCGGuGCUUU---------CGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 36265 0.69 0.493393
Target:  5'- gCGcgCGCCGCUGCGcauGC-CGGGCc -3'
miRNA:   3'- aGCuaGCGGCGGUGCuuuCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30685 0.68 0.514163
Target:  5'- gUCGGU-GCgGUCgaguGCGAGcAGCGUGAGCg -3'
miRNA:   3'- -AGCUAgCGgCGG----UGCUU-UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 8377 0.66 0.633103
Target:  5'- gCGuUCGgaCgGCCAC---AGCGCGAGCg -3'
miRNA:   3'- aGCuAGC--GgCGGUGcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9274 0.67 0.622116
Target:  5'- gUUGGccgUGCCGaucagCGCGAAgcGGCGCGGGUg -3'
miRNA:   3'- -AGCUa--GCGGCg----GUGCUU--UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 46674 0.67 0.622116
Target:  5'- cCGAcUCGCCGUCGCuc--GCGCaguucGAGCa -3'
miRNA:   3'- aGCU-AGCGGCGGUGcuuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 8857 0.66 0.675852
Target:  5'- -aGcgCGCCGCCGcCGAGcgaaucggcugccAGCcccggGUGAGCa -3'
miRNA:   3'- agCuaGCGGCGGU-GCUU-------------UCG-----CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9875 0.83 0.062208
Target:  5'- cCGGUCGCCGCgugCACGGucGCGCGuGCa -3'
miRNA:   3'- aGCUAGCGGCG---GUGCUuuCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 27959 1.11 0.000573
Target:  5'- gUCGAUCGCCGCCACGAAAGCGCGAGCc -3'
miRNA:   3'- -AGCUAGCGGCGGUGCUUUCGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.