miRNA display CGI


Results 121 - 140 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 39853 0.68 0.53528
Target:  5'- aCGggCGCguaaCGCauaGCG-GGGCGCGAGCc -3'
miRNA:   3'- aGCuaGCG----GCGg--UGCuUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 4718 0.69 0.473016
Target:  5'- uUCGAUUGCgGCgCGCaAgcGCGCGAuGCg -3'
miRNA:   3'- -AGCUAGCGgCG-GUGcUuuCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 31326 0.78 0.130324
Target:  5'- gUCGAUCGCCuugGCCGCGAc-GCGCugcucGAGCg -3'
miRNA:   3'- -AGCUAGCGG---CGGUGCUuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 19302 0.76 0.191141
Target:  5'- gCGAUCGCgCGgCACGAgcgcuuGAGCGCGccGGCu -3'
miRNA:   3'- aGCUAGCG-GCgGUGCU------UUCGCGC--UCG- -5'
17040 3' -55.9 NC_004333.2 + 38989 0.75 0.212626
Target:  5'- gCGAUCgacacuGCCGUCGCGAAcgaacgcaAGCGCGcAGCu -3'
miRNA:   3'- aGCUAG------CGGCGGUGCUU--------UCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 3062 0.75 0.218313
Target:  5'- gCGAUCGCCGCgCA-GAcAGGCGuCGAGUa -3'
miRNA:   3'- aGCUAGCGGCG-GUgCU-UUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 39195 0.74 0.255204
Target:  5'- gUCGGUCGCCGCCGCGcacGGcCGCa--- -3'
miRNA:   3'- -AGCUAGCGGCGGUGCuu-UC-GCGcucg -5'
17040 3' -55.9 NC_004333.2 + 39161 0.74 0.261828
Target:  5'- gCGAgcgCGCCGCCugGcAAGcCGCGAacGCc -3'
miRNA:   3'- aGCUa--GCGGCGGugCuUUC-GCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 36234 0.73 0.297056
Target:  5'- gCGcUCGaCCGCCugGAgcGCGCGuaauGGCg -3'
miRNA:   3'- aGCuAGC-GGCGGugCUuuCGCGC----UCG- -5'
17040 3' -55.9 NC_004333.2 + 8951 0.73 0.297056
Target:  5'- gUCGAgcauugcaCGCagcucgGCCgACGGGAGCGCGGGCc -3'
miRNA:   3'- -AGCUa-------GCGg-----CGG-UGCUUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 23426 0.81 0.087816
Target:  5'- gCGAUCGUCGCCGCGuu--CGUGAGCg -3'
miRNA:   3'- aGCUAGCGGCGGUGCuuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9875 0.83 0.062208
Target:  5'- cCGGUCGCCGCgugCACGGucGCGCGuGCa -3'
miRNA:   3'- aGCUAGCGGCG---GUGCUuuCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 6020 0.66 0.64409
Target:  5'- gCGAggaCGCUGUUGCccucGGGCGUGAGCg -3'
miRNA:   3'- aGCUa--GCGGCGGUGcu--UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47012 0.66 0.637498
Target:  5'- cCGAagcaaGCCGCCGCGAucggauaugcagugcAAcgucGCGCGcAGCa -3'
miRNA:   3'- aGCUag---CGGCGGUGCU---------------UU----CGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 34635 0.66 0.633103
Target:  5'- cCGGccUgGCCGCCgGCGGcaacGcCGCGAGCa -3'
miRNA:   3'- aGCU--AgCGGCGG-UGCUuu--C-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 8377 0.66 0.633103
Target:  5'- gCGuUCGgaCgGCCAC---AGCGCGAGCg -3'
miRNA:   3'- aGCuAGC--GgCGGUGcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9274 0.67 0.622116
Target:  5'- gUUGGccgUGCCGaucagCGCGAAgcGGCGCGGGUg -3'
miRNA:   3'- -AGCUa--GCGGCg----GUGCUU--UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 46674 0.67 0.622116
Target:  5'- cCGAcUCGCCGUCGCuc--GCGCaguucGAGCa -3'
miRNA:   3'- aGCU-AGCGGCGGUGcuuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 44552 0.67 0.622116
Target:  5'- -aGGUCGaCUGCUACGGcccgcAGGCGCccgacuGGGCg -3'
miRNA:   3'- agCUAGC-GGCGGUGCU-----UUCGCG------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 27959 1.11 0.000573
Target:  5'- gUCGAUCGCCGCCACGAAAGCGCGAGCc -3'
miRNA:   3'- -AGCUAGCGGCGGUGCUUUCGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.