Results 141 - 160 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 17486 | 0.72 | 0.304528 |
Target: 5'- aCGAagUUGCCGCCgccgGCGgcGGCGCGAacgGCu -3' miRNA: 3'- aGCU--AGCGGCGG----UGCuuUCGCGCU---CG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 8951 | 0.73 | 0.297056 |
Target: 5'- gUCGAgcauugcaCGCagcucgGCCgACGGGAGCGCGGGCc -3' miRNA: 3'- -AGCUa-------GCGg-----CGG-UGCUUUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 27959 | 1.11 | 0.000573 |
Target: 5'- gUCGAUCGCCGCCACGAAAGCGCGAGCc -3' miRNA: 3'- -AGCUAGCGGCGGUGCUUUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 4849 | 0.68 | 0.53528 |
Target: 5'- -aGAUgGCCGUCAUGAuuuccGGCGUcGGCu -3' miRNA: 3'- agCUAgCGGCGGUGCUu----UCGCGcUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 3145 | 0.68 | 0.53528 |
Target: 5'- uUUGcgCGCCGCCAgCGccacGCGCggucGAGCg -3' miRNA: 3'- -AGCuaGCGGCGGU-GCuuu-CGCG----CUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 39853 | 0.68 | 0.53528 |
Target: 5'- aCGggCGCguaaCGCauaGCG-GGGCGCGAGCc -3' miRNA: 3'- aGCuaGCG----GCGg--UGCuUUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 34529 | 0.68 | 0.53528 |
Target: 5'- cUCGcgCaGCUGCC-CGAGuaccGCGCGAuGCa -3' miRNA: 3'- -AGCuaG-CGGCGGuGCUUu---CGCGCU-CG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29364 | 0.68 | 0.542744 |
Target: 5'- uUCGAUagcagcacgcgcccUGCgGCCGCGcgauAAGCGCGguucAGCg -3' miRNA: 3'- -AGCUA--------------GCGgCGGUGCu---UUCGCGC----UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 43044 | 0.68 | 0.554541 |
Target: 5'- gCGGcUCGcCCGUgACGGAcgacaaugugcuGCGCGAGCu -3' miRNA: 3'- aGCU-AGC-GGCGgUGCUUu-----------CGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 21055 | 0.67 | 0.567494 |
Target: 5'- uUCGAagCGCaguuCCACGAGGGuCGCGcGCa -3' miRNA: 3'- -AGCUa-GCGgc--GGUGCUUUC-GCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 9875 | 0.83 | 0.062208 |
Target: 5'- cCGGUCGCCGCgugCACGGucGCGCGuGCa -3' miRNA: 3'- aGCUAGCGGCG---GUGCUuuCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 5192 | 0.82 | 0.073743 |
Target: 5'- gUCGAgagCGCCGCCcgcucguccgccgGCGAGGGUGCGGGUu -3' miRNA: 3'- -AGCUa--GCGGCGG-------------UGCUUUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 36234 | 0.73 | 0.297056 |
Target: 5'- gCGcUCGaCCGCCugGAgcGCGCGuaauGGCg -3' miRNA: 3'- aGCuAGC-GGCGGugCUuuCGCGC----UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 39161 | 0.74 | 0.261828 |
Target: 5'- gCGAgcgCGCCGCCugGcAAGcCGCGAacGCc -3' miRNA: 3'- aGCUa--GCGGCGGugCuUUC-GCGCU--CG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 39195 | 0.74 | 0.255204 |
Target: 5'- gUCGGUCGCCGCCGCGcacGGcCGCa--- -3' miRNA: 3'- -AGCUAGCGGCGGUGCuu-UC-GCGcucg -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 3062 | 0.75 | 0.218313 |
Target: 5'- gCGAUCGCCGCgCA-GAcAGGCGuCGAGUa -3' miRNA: 3'- aGCUAGCGGCG-GUgCU-UUCGC-GCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 38989 | 0.75 | 0.212626 |
Target: 5'- gCGAUCgacacuGCCGUCGCGAAcgaacgcaAGCGCGcAGCu -3' miRNA: 3'- aGCUAG------CGGCGGUGCUU--------UCGCGC-UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28661 | 0.75 | 0.201099 |
Target: 5'- aCGAUUGCCcauacgGCCACGAGcgccgccAGCGCGccAGCg -3' miRNA: 3'- aGCUAGCGG------CGGUGCUU-------UCGCGC--UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 19302 | 0.76 | 0.191141 |
Target: 5'- gCGAUCGCgCGgCACGAgcgcuuGAGCGCGccGGCu -3' miRNA: 3'- aGCUAGCG-GCgGUGCU------UUCGCGC--UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 23426 | 0.81 | 0.087816 |
Target: 5'- gCGAUCGUCGCCGCGuu--CGUGAGCg -3' miRNA: 3'- aGCUAGCGGCGGUGCuuucGCGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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