miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 23029 0.66 0.655065
Target:  5'- gUCGAUCggaggcaucggGCagGCCGCGAAcGUGCGcGCc -3'
miRNA:   3'- -AGCUAG-----------CGg-CGGUGCUUuCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 27306 0.66 0.655065
Target:  5'- cUCG-UCGCCGCCcauACcuuguGGCGUucGAGCa -3'
miRNA:   3'- -AGCuAGCGGCGG---UGcuu--UCGCG--CUCG- -5'
17040 3' -55.9 NC_004333.2 + 20026 0.67 0.622116
Target:  5'- gCGuAUCGCUGUCAaccuCGgcGGCGCGcAGUa -3'
miRNA:   3'- aGC-UAGCGGCGGU----GCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 47482 0.67 0.611138
Target:  5'- gCGggCGgCGgCACGAucGCGCucaccGAGCa -3'
miRNA:   3'- aGCuaGCgGCgGUGCUuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 2755 0.67 0.611138
Target:  5'- gCGccGUCGCCGCCGcCGAAA-C-CGAGUg -3'
miRNA:   3'- aGC--UAGCGGCGGU-GCUUUcGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 41525 0.67 0.600178
Target:  5'- cUCGAgcgCGCCGagCGCGcugccGAGCGCGAu- -3'
miRNA:   3'- -AGCUa--GCGGCg-GUGCu----UUCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 15567 0.67 0.600178
Target:  5'- gUCGAa-GCCGCaCGCGAAuaCGCGGcGCg -3'
miRNA:   3'- -AGCUagCGGCG-GUGCUUucGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 42763 0.67 0.600178
Target:  5'- aCGA-CGCUGCCGCGAuGGCagaagaacGCGAa- -3'
miRNA:   3'- aGCUaGCGGCGGUGCUuUCG--------CGCUcg -5'
17040 3' -55.9 NC_004333.2 + 26447 0.67 0.600178
Target:  5'- gUCGAacuUCGCUGCguCGAGcugcuGGCGCacgugcgcauaGAGCg -3'
miRNA:   3'- -AGCU---AGCGGCGguGCUU-----UCGCG-----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 10168 0.67 0.600178
Target:  5'- -gGGUCGgCGCaCugGAagccGAGCgacGCGGGCa -3'
miRNA:   3'- agCUAGCgGCG-GugCU----UUCG---CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 44552 0.67 0.622116
Target:  5'- -aGGUCGaCUGCUACGGcccgcAGGCGCccgacuGGGCg -3'
miRNA:   3'- agCUAGC-GGCGGUGCU-----UUCGCG------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 46674 0.67 0.622116
Target:  5'- cCGAcUCGCCGUCGCuc--GCGCaguucGAGCa -3'
miRNA:   3'- aGCU-AGCGGCGGUGcuuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 25902 0.66 0.653969
Target:  5'- aUGGUCGgCGUCuCGGGcuggcuuGGCGCaGAGCg -3'
miRNA:   3'- aGCUAGCgGCGGuGCUU-------UCGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 43609 0.66 0.653969
Target:  5'- aCGAUUGCCGaCCGC---AGCGCcgaauggaucaaaGGGCu -3'
miRNA:   3'- aGCUAGCGGC-GGUGcuuUCGCG-------------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 34415 0.66 0.64409
Target:  5'- ----aCGCCG-CGCGAGcGGCGCGcGGCg -3'
miRNA:   3'- agcuaGCGGCgGUGCUU-UCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 6020 0.66 0.64409
Target:  5'- gCGAggaCGCUGUUGCccucGGGCGUGAGCg -3'
miRNA:   3'- aGCUa--GCGGCGGUGcu--UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47012 0.66 0.637498
Target:  5'- cCGAagcaaGCCGCCGCGAucggauaugcagugcAAcgucGCGCGcAGCa -3'
miRNA:   3'- aGCUag---CGGCGGUGCU---------------UU----CGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 34635 0.66 0.633103
Target:  5'- cCGGccUgGCCGCCgGCGGcaacGcCGCGAGCa -3'
miRNA:   3'- aGCU--AgCGGCGG-UGCUuu--C-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 8377 0.66 0.633103
Target:  5'- gCGuUCGgaCgGCCAC---AGCGCGAGCg -3'
miRNA:   3'- aGCuAGC--GgCGGUGcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9274 0.67 0.622116
Target:  5'- gUUGGccgUGCCGaucagCGCGAAgcGGCGCGGGUg -3'
miRNA:   3'- -AGCUa--GCGGCg----GUGCUU--UCGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.