miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 22507 0.67 0.578347
Target:  5'- -aGGUCGCCGCguuCGCGAcGGC-CG-GCa -3'
miRNA:   3'- agCUAGCGGCG---GUGCUuUCGcGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 10762 0.67 0.567494
Target:  5'- aCG--UGCaCGCCGCGcAAAcCGCGAGCg -3'
miRNA:   3'- aGCuaGCG-GCGGUGC-UUUcGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 21055 0.67 0.567494
Target:  5'- uUCGAagCGCaguuCCACGAGGGuCGCGcGCa -3'
miRNA:   3'- -AGCUa-GCGgc--GGUGCUUUC-GCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 43044 0.68 0.554541
Target:  5'- gCGGcUCGcCCGUgACGGAcgacaaugugcuGCGCGAGCu -3'
miRNA:   3'- aGCU-AGC-GGCGgUGCUUu-----------CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 29364 0.68 0.542744
Target:  5'- uUCGAUagcagcacgcgcccUGCgGCCGCGcgauAAGCGCGguucAGCg -3'
miRNA:   3'- -AGCUA--------------GCGgCGGUGCu---UUCGCGC----UCG- -5'
17040 3' -55.9 NC_004333.2 + 34529 0.68 0.53528
Target:  5'- cUCGcgCaGCUGCC-CGAGuaccGCGCGAuGCa -3'
miRNA:   3'- -AGCuaG-CGGCGGuGCUUu---CGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 39853 0.68 0.53528
Target:  5'- aCGggCGCguaaCGCauaGCG-GGGCGCGAGCc -3'
miRNA:   3'- aGCuaGCG----GCGg--UGCuUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 10168 0.67 0.600178
Target:  5'- -gGGUCGgCGCaCugGAagccGAGCgacGCGGGCa -3'
miRNA:   3'- agCUAGCgGCG-GugCU----UUCG---CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 26447 0.67 0.600178
Target:  5'- gUCGAacuUCGCUGCguCGAGcugcuGGCGCacgugcgcauaGAGCg -3'
miRNA:   3'- -AGCU---AGCGGCGguGCUU-----UCGCG-----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 42763 0.67 0.600178
Target:  5'- aCGA-CGCUGCCGCGAuGGCagaagaacGCGAa- -3'
miRNA:   3'- aGCUaGCGGCGGUGCUuUCG--------CGCUcg -5'
17040 3' -55.9 NC_004333.2 + 8377 0.66 0.633103
Target:  5'- gCGuUCGgaCgGCCAC---AGCGCGAGCg -3'
miRNA:   3'- aGCuAGC--GgCGGUGcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9274 0.67 0.622116
Target:  5'- gUUGGccgUGCCGaucagCGCGAAgcGGCGCGGGUg -3'
miRNA:   3'- -AGCUa--GCGGCg----GUGCUU--UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 46674 0.67 0.622116
Target:  5'- cCGAcUCGCCGUCGCuc--GCGCaguucGAGCa -3'
miRNA:   3'- aGCU-AGCGGCGGUGcuuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 44552 0.67 0.622116
Target:  5'- -aGGUCGaCUGCUACGGcccgcAGGCGCccgacuGGGCg -3'
miRNA:   3'- agCUAGC-GGCGGUGCU-----UUCGCG------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 20026 0.67 0.622116
Target:  5'- gCGuAUCGCUGUCAaccuCGgcGGCGCGcAGUa -3'
miRNA:   3'- aGC-UAGCGGCGGU----GCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 47482 0.67 0.611138
Target:  5'- gCGggCGgCGgCACGAucGCGCucaccGAGCa -3'
miRNA:   3'- aGCuaGCgGCgGUGCUuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 2755 0.67 0.611138
Target:  5'- gCGccGUCGCCGCCGcCGAAA-C-CGAGUg -3'
miRNA:   3'- aGC--UAGCGGCGGU-GCUUUcGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 41525 0.67 0.600178
Target:  5'- cUCGAgcgCGCCGagCGCGcugccGAGCGCGAu- -3'
miRNA:   3'- -AGCUa--GCGGCg-GUGCu----UUCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 15567 0.67 0.600178
Target:  5'- gUCGAa-GCCGCaCGCGAAuaCGCGGcGCg -3'
miRNA:   3'- -AGCUagCGGCG-GUGCUUucGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 3145 0.68 0.53528
Target:  5'- uUUGcgCGCCGCCAgCGccacGCGCggucGAGCg -3'
miRNA:   3'- -AGCuaGCGGCGGU-GCuuu-CGCG----CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.