miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 20026 0.67 0.622116
Target:  5'- gCGuAUCGCUGUCAaccuCGgcGGCGCGcAGUa -3'
miRNA:   3'- aGC-UAGCGGCGGU----GCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 47482 0.67 0.611138
Target:  5'- gCGggCGgCGgCACGAucGCGCucaccGAGCa -3'
miRNA:   3'- aGCuaGCgGCgGUGCUuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 2755 0.67 0.611138
Target:  5'- gCGccGUCGCCGCCGcCGAAA-C-CGAGUg -3'
miRNA:   3'- aGC--UAGCGGCGGU-GCUUUcGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 41525 0.67 0.600178
Target:  5'- cUCGAgcgCGCCGagCGCGcugccGAGCGCGAu- -3'
miRNA:   3'- -AGCUa--GCGGCg-GUGCu----UUCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 28750 0.67 0.589244
Target:  5'- aCGcgCGUgaaCGUCGCGGGuAGCGCG-GCg -3'
miRNA:   3'- aGCuaGCG---GCGGUGCUU-UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 10168 0.67 0.600178
Target:  5'- -gGGUCGgCGCaCugGAagccGAGCgacGCGGGCa -3'
miRNA:   3'- agCUAGCgGCG-GugCU----UUCG---CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 26447 0.67 0.600178
Target:  5'- gUCGAacuUCGCUGCguCGAGcugcuGGCGCacgugcgcauaGAGCg -3'
miRNA:   3'- -AGCU---AGCGGCGguGCUU-----UCGCG-----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 42763 0.67 0.600178
Target:  5'- aCGA-CGCUGCCGCGAuGGCagaagaacGCGAa- -3'
miRNA:   3'- aGCUaGCGGCGGUGCUuUCG--------CGCUcg -5'
17040 3' -55.9 NC_004333.2 + 15567 0.67 0.600178
Target:  5'- gUCGAa-GCCGCaCGCGAAuaCGCGGcGCg -3'
miRNA:   3'- -AGCUagCGGCG-GUGCUUucGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 46351 0.73 0.28254
Target:  5'- cCGuuaugCGCCGCUGCGGAuuuGGCGCG-GCc -3'
miRNA:   3'- aGCua---GCGGCGGUGCUU---UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 700 0.73 0.28254
Target:  5'- gCGAUCguGCCGCCGCc----CGCGAGCg -3'
miRNA:   3'- aGCUAG--CGGCGGUGcuuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 168 0.74 0.261828
Target:  5'- aCGAUCGgCGCCu----GGCGCGAGUc -3'
miRNA:   3'- aGCUAGCgGCGGugcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6589 0.75 0.224128
Target:  5'- cCGcAUCGCCGCCACG---GCGCGccgcccAGCg -3'
miRNA:   3'- aGC-UAGCGGCGGUGCuuuCGCGC------UCG- -5'
17040 3' -55.9 NC_004333.2 + 11873 0.75 0.201635
Target:  5'- cCGGUCgGCCGaaACG--GGCGCGAGCa -3'
miRNA:   3'- aGCUAG-CGGCggUGCuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 32349 0.76 0.191141
Target:  5'- -gGGUCGCUGCC-CGAuAGCGUGcGCa -3'
miRNA:   3'- agCUAGCGGCGGuGCUuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32756 0.76 0.18113
Target:  5'- -aGGUCGCUGCCGcCGGccauAAGCGCG-GCa -3'
miRNA:   3'- agCUAGCGGCGGU-GCU----UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 29014 0.76 0.1763
Target:  5'- aUCGcgCGCgGCuagCACGAuaaccAGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCGgCG---GUGCUu----UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 28758 0.76 0.171585
Target:  5'- gCGAgCGCCGCguCGAccGCGCGGGUc -3'
miRNA:   3'- aGCUaGCGGCGguGCUuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 43577 0.79 0.110169
Target:  5'- gUCGcgCGCuCGCCucgaacGCGAGuGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCG-GCGG------UGCUUuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 39156 0.66 0.686737
Target:  5'- cCGAUCucgacgacauccuGCCGCC-CGugcuGCGCGcGCu -3'
miRNA:   3'- aGCUAG-------------CGGCGGuGCuuu-CGCGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.