miRNA display CGI


Results 121 - 140 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 9578 0.7 0.414612
Target:  5'- uUCG-UUGCCGCCACcuucAGCGCcAGCc -3'
miRNA:   3'- -AGCuAGCGGCGGUGcuu-UCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 36300 0.7 0.424039
Target:  5'- gCGAUacgCGCCGCC-CGAGuAGuCGcCGGGCg -3'
miRNA:   3'- aGCUA---GCGGCGGuGCUU-UC-GC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 18600 0.7 0.433594
Target:  5'- ----aCGaCCGgCGCGGcAGGCGCGGGCg -3'
miRNA:   3'- agcuaGC-GGCgGUGCU-UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 19787 0.7 0.433594
Target:  5'- -gGAUCGU-GCCGCGcguuGAGUGCGAuGCg -3'
miRNA:   3'- agCUAGCGgCGGUGCu---UUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 30232 0.71 0.351538
Target:  5'- aUCGAcgCGCCGCgCGCGAucAGUGCGuucaugacguacaGGCg -3'
miRNA:   3'- -AGCUa-GCGGCG-GUGCUu-UCGCGC-------------UCG- -5'
17040 3' -55.9 NC_004333.2 + 27533 0.72 0.335855
Target:  5'- gUCGAUCGCaaguGCCGCGccGGgGCGAaucuGCg -3'
miRNA:   3'- -AGCUAGCGg---CGGUGCuuUCgCGCU----CG- -5'
17040 3' -55.9 NC_004333.2 + 43577 0.79 0.110169
Target:  5'- gUCGcgCGCuCGCCucgaacGCGAGuGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCG-GCGG------UGCUUuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 28758 0.76 0.171585
Target:  5'- gCGAgCGCCGCguCGAccGCGCGGGUc -3'
miRNA:   3'- aGCUaGCGGCGguGCUuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 29014 0.76 0.1763
Target:  5'- aUCGcgCGCgGCuagCACGAuaaccAGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCGgCG---GUGCUu----UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 32756 0.76 0.18113
Target:  5'- -aGGUCGCUGCCGcCGGccauAAGCGCG-GCa -3'
miRNA:   3'- agCUAGCGGCGGU-GCU----UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32349 0.76 0.191141
Target:  5'- -gGGUCGCUGCC-CGAuAGCGUGcGCa -3'
miRNA:   3'- agCUAGCGGCGGuGCUuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 11873 0.75 0.201635
Target:  5'- cCGGUCgGCCGaaACG--GGCGCGAGCa -3'
miRNA:   3'- aGCUAG-CGGCggUGCuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6589 0.75 0.224128
Target:  5'- cCGcAUCGCCGCCACG---GCGCGccgcccAGCg -3'
miRNA:   3'- aGC-UAGCGGCGGUGCuuuCGCGC------UCG- -5'
17040 3' -55.9 NC_004333.2 + 168 0.74 0.261828
Target:  5'- aCGAUCGgCGCCu----GGCGCGAGUc -3'
miRNA:   3'- aGCUAGCgGCGGugcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 700 0.73 0.28254
Target:  5'- gCGAUCguGCCGCCGCc----CGCGAGCg -3'
miRNA:   3'- aGCUAG--CGGCGGUGcuuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 46351 0.73 0.28254
Target:  5'- cCGuuaugCGCCGCUGCGGAuuuGGCGCG-GCc -3'
miRNA:   3'- aGCua---GCGGCGGUGCUU---UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 2495 0.73 0.297056
Target:  5'- aUCGA-CGCUGCCuCGAGaucgGGCGCGAcGUa -3'
miRNA:   3'- -AGCUaGCGGCGGuGCUU----UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 14806 0.73 0.297056
Target:  5'- aUCuuUCGCCG-CACGc--GCGCGAGCa -3'
miRNA:   3'- -AGcuAGCGGCgGUGCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 37729 0.72 0.304528
Target:  5'- gUCGGcaaGCUGCCGCGccuGCGCGAGa -3'
miRNA:   3'- -AGCUag-CGGCGGUGCuuuCGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 9445 0.72 0.319904
Target:  5'- cCGGuUCGCCGUCcuGCGcaccAGGCGCGGGUg -3'
miRNA:   3'- aGCU-AGCGGCGG--UGCu---UUCGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.