miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 40301 0.66 0.666019
Target:  5'- -aGA-CGUgGaCGCGAuggggcGAGCGCGAGCu -3'
miRNA:   3'- agCUaGCGgCgGUGCU------UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 45165 0.66 0.666019
Target:  5'- uUCGcgCGCuacguCGCgGCGGAcGCGCcGGCg -3'
miRNA:   3'- -AGCuaGCG-----GCGgUGCUUuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 19073 0.66 0.666019
Target:  5'- -aGA-CGUCGCCACuc-GGCGCG-GCc -3'
miRNA:   3'- agCUaGCGGCGGUGcuuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32806 0.66 0.664925
Target:  5'- gUCGAgcgguUCGCgaucagucaggaaCGCCACGugcaacauGAGCGCG-GCc -3'
miRNA:   3'- -AGCU-----AGCG-------------GCGGUGCu-------UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 25858 0.66 0.664925
Target:  5'- gUCGAU-GCgaaucugcagcagCGCUugGu--GCGCGAGCg -3'
miRNA:   3'- -AGCUAgCG-------------GCGGugCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 23029 0.66 0.655065
Target:  5'- gUCGAUCggaggcaucggGCagGCCGCGAAcGUGCGcGCc -3'
miRNA:   3'- -AGCUAG-----------CGg-CGGUGCUUuCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 11812 0.66 0.655065
Target:  5'- aCGA-CGCgGCCAUc--AGCGCGAcgGCg -3'
miRNA:   3'- aGCUaGCGgCGGUGcuuUCGCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 27306 0.66 0.655065
Target:  5'- cUCG-UCGCCGCCcauACcuuguGGCGUucGAGCa -3'
miRNA:   3'- -AGCuAGCGGCGG---UGcuu--UCGCG--CUCG- -5'
17040 3' -55.9 NC_004333.2 + 13926 0.66 0.655065
Target:  5'- gCGAUCGUgGCCGCugccgccAGCGUG-GCc -3'
miRNA:   3'- aGCUAGCGgCGGUGcuu----UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 28457 0.66 0.655065
Target:  5'- cCGucUUGCaCGCCACc--AGCGcCGAGCa -3'
miRNA:   3'- aGCu-AGCG-GCGGUGcuuUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9350 0.66 0.655065
Target:  5'- cUCG-UCGUCGgCGCGc-GGCGuCGGGCc -3'
miRNA:   3'- -AGCuAGCGGCgGUGCuuUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 38751 0.66 0.655065
Target:  5'- aCGAUggaaGCgGCCACGAGcGGCaucgcCGAGCu -3'
miRNA:   3'- aGCUAg---CGgCGGUGCUU-UCGc----GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 26110 0.66 0.655065
Target:  5'- uUCGGgguaGCCGCC-CGcAAGCaggaCGAGCu -3'
miRNA:   3'- -AGCUag--CGGCGGuGCuUUCGc---GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 25902 0.66 0.653969
Target:  5'- aUGGUCGgCGUCuCGGGcuggcuuGGCGCaGAGCg -3'
miRNA:   3'- aGCUAGCgGCGGuGCUU-------UCGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 43609 0.66 0.653969
Target:  5'- aCGAUUGCCGaCCGC---AGCGCcgaauggaucaaaGGGCu -3'
miRNA:   3'- aGCUAGCGGC-GGUGcuuUCGCG-------------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 19947 0.66 0.648482
Target:  5'- gCGGcgaGCCGCCGCGAGugcuuugcccgacuGCGCGcugucGGCc -3'
miRNA:   3'- aGCUag-CGGCGGUGCUUu-------------CGCGC-----UCG- -5'
17040 3' -55.9 NC_004333.2 + 34415 0.66 0.64409
Target:  5'- ----aCGCCG-CGCGAGcGGCGCGcGGCg -3'
miRNA:   3'- agcuaGCGGCgGUGCUU-UCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 6020 0.66 0.64409
Target:  5'- gCGAggaCGCUGUUGCccucGGGCGUGAGCg -3'
miRNA:   3'- aGCUa--GCGGCGGUGcu--UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47012 0.66 0.637498
Target:  5'- cCGAagcaaGCCGCCGCGAucggauaugcagugcAAcgucGCGCGcAGCa -3'
miRNA:   3'- aGCUag---CGGCGGUGCU---------------UU----CGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 8377 0.66 0.633103
Target:  5'- gCGuUCGgaCgGCCAC---AGCGCGAGCg -3'
miRNA:   3'- aGCuAGC--GgCGGUGcuuUCGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.