Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17041 | 3' | -60.9 | NC_004333.2 | + | 17604 | 0.66 | 0.433898 |
Target: 5'- --aGCGGUCGaUGUC-GCGGUGUUCGGc -3' miRNA: 3'- gcgCGUCGGC-GCAGcCGCUACAGGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 23062 | 0.66 | 0.433898 |
Target: 5'- gCGCGCcGCCGUGcUCGcCG-UGcCCGGa -3' miRNA: 3'- -GCGCGuCGGCGC-AGCcGCuACaGGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 30626 | 0.66 | 0.433898 |
Target: 5'- uCGUGCAG-CGCuUCGGgGAUGUgCGc -3' miRNA: 3'- -GCGCGUCgGCGcAGCCgCUACAgGCc -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 29376 | 0.66 | 0.442258 |
Target: 5'- aCGCGCccugcGGCCGCGcgauaagcgcgguUCaGCGAUGg-CGGg -3' miRNA: 3'- -GCGCG-----UCGGCGC-------------AGcCGCUACagGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 36435 | 0.66 | 0.443192 |
Target: 5'- aCGuCGguGCCG-GUCGGC--UG-CCGGa -3' miRNA: 3'- -GC-GCguCGGCgCAGCCGcuACaGGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 47364 | 0.66 | 0.443192 |
Target: 5'- aGUGCAGCUguucgguccuGCGcCGGCGA---CCGGc -3' miRNA: 3'- gCGCGUCGG----------CGCaGCCGCUacaGGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 22870 | 0.66 | 0.443192 |
Target: 5'- uCGCgGCAGUCGC--CGGCGucgGcCCGGu -3' miRNA: 3'- -GCG-CGUCGGCGcaGCCGCua-CaGGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 29945 | 0.66 | 0.443192 |
Target: 5'- gCGUGCcGUCgGCGUCGuaGAUuUCCGGc -3' miRNA: 3'- -GCGCGuCGG-CGCAGCcgCUAcAGGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 17221 | 0.66 | 0.452597 |
Target: 5'- uCGCGCuugacGGCCGC--CGGCGuaucgCCGGa -3' miRNA: 3'- -GCGCG-----UCGGCGcaGCCGCuaca-GGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 39182 | 0.66 | 0.406712 |
Target: 5'- cCGCGaacGCCGCGUCGGuCGccG-CCGc -3' miRNA: 3'- -GCGCgu-CGGCGCAGCC-GCuaCaGGCc -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 17008 | 0.66 | 0.430212 |
Target: 5'- gCGCGCcgucugGGCgGCGaugccaaggcgggCGGCGAUGcauucgCCGGg -3' miRNA: 3'- -GCGCG------UCGgCGCa------------GCCGCUACa-----GGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 29580 | 0.66 | 0.424718 |
Target: 5'- cCGCGCcuGCCGCGcCGGUcguuuguugcacGAacggGUUCGGa -3' miRNA: 3'- -GCGCGu-CGGCGCaGCCG------------CUa---CAGGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 42979 | 0.66 | 0.424718 |
Target: 5'- gGUGCcgacGCCGCGccugcaGGCGAUGUUCa- -3' miRNA: 3'- gCGCGu---CGGCGCag----CCGCUACAGGcc -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 27670 | 0.66 | 0.414755 |
Target: 5'- gGCGCGGCgGCGgcCGGCaGcgGUugcgcggcagccgCCGGg -3' miRNA: 3'- gCGCGUCGgCGCa-GCCG-CuaCA-------------GGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 26288 | 0.67 | 0.372174 |
Target: 5'- gCGCGCA-CCGCGcCGuCGAUGcgaaagCCGGu -3' miRNA: 3'- -GCGCGUcGGCGCaGCcGCUACa-----GGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 23893 | 0.67 | 0.389192 |
Target: 5'- uCGCGCAGUCGCcg-GGCGAcaauUUCGGg -3' miRNA: 3'- -GCGCGUCGGCGcagCCGCUac--AGGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 9008 | 0.67 | 0.363857 |
Target: 5'- gCGCGCAGCaCGgG-CGGCagGAUGUCg-- -3' miRNA: 3'- -GCGCGUCG-GCgCaGCCG--CUACAGgcc -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 35768 | 0.67 | 0.35567 |
Target: 5'- aGCGCuuGGCCGaaggCGGCGAcacUGgcgcgCCGGg -3' miRNA: 3'- gCGCG--UCGGCgca-GCCGCU---ACa----GGCC- -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 18216 | 0.67 | 0.347613 |
Target: 5'- aGCGCGGCCGCGcUCGGCa-------- -3' miRNA: 3'- gCGCGUCGGCGC-AGCCGcuacaggcc -5' |
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17041 | 3' | -60.9 | NC_004333.2 | + | 22175 | 0.67 | 0.389192 |
Target: 5'- uCGC-CGGCgGCGgcCGGCGGcgGUUCGGc -3' miRNA: 3'- -GCGcGUCGgCGCa-GCCGCUa-CAGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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