miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17041 3' -60.9 NC_004333.2 + 29580 0.66 0.424718
Target:  5'- cCGCGCcuGCCGCGcCGGUcguuuguugcacGAacggGUUCGGa -3'
miRNA:   3'- -GCGCGu-CGGCGCaGCCG------------CUa---CAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 43728 0.66 0.424718
Target:  5'- aCGCGUcgcaacaauGGCCcGCGUUGGCGG-GUuuGa -3'
miRNA:   3'- -GCGCG---------UCGG-CGCAGCCGCUaCAggCc -5'
17041 3' -60.9 NC_004333.2 + 46412 0.66 0.423806
Target:  5'- aGCGgGGCUGgaucgaaUGgaagggCGGCGAgUGUCCGGu -3'
miRNA:   3'- gCGCgUCGGC-------GCa-----GCCGCU-ACAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 23721 0.66 0.415655
Target:  5'- uCGCGCgAGuuGCGUCGGaCGucguaaCGGg -3'
miRNA:   3'- -GCGCG-UCggCGCAGCC-GCuacag-GCC- -5'
17041 3' -60.9 NC_004333.2 + 16850 0.66 0.415655
Target:  5'- aGCGC-GUCGCGgccaaGGCGAucgacgggcgacUGUUCGGc -3'
miRNA:   3'- gCGCGuCGGCGCag---CCGCU------------ACAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 27670 0.66 0.414755
Target:  5'- gGCGCGGCgGCGgcCGGCaGcgGUugcgcggcagccgCCGGg -3'
miRNA:   3'- gCGCGUCGgCGCa-GCCG-CuaCA-------------GGCC- -5'
17041 3' -60.9 NC_004333.2 + 39182 0.66 0.406712
Target:  5'- cCGCGaacGCCGCGUCGGuCGccG-CCGc -3'
miRNA:   3'- -GCGCgu-CGGCGCAGCC-GCuaCaGGCc -5'
17041 3' -60.9 NC_004333.2 + 3559 0.66 0.406712
Target:  5'- cCGCGCAG-CGCGUCGGcCGAccacauagUGcgCCa- -3'
miRNA:   3'- -GCGCGUCgGCGCAGCC-GCU--------ACa-GGcc -5'
17041 3' -60.9 NC_004333.2 + 29971 0.66 0.406712
Target:  5'- aGCGCGGCCGCGcugccacCGGCGccGagCGc -3'
miRNA:   3'- gCGCGUCGGCGCa------GCCGCuaCagGCc -5'
17041 3' -60.9 NC_004333.2 + 23334 0.66 0.406712
Target:  5'- uCGUGCGGCCGcCGaCGGuCGAgGUCUa- -3'
miRNA:   3'- -GCGCGUCGGC-GCaGCC-GCUaCAGGcc -5'
17041 3' -60.9 NC_004333.2 + 30713 0.66 0.405824
Target:  5'- aGCGCGGCggccuuCGCGUUGcGCcacauccGGUGcCCGGg -3'
miRNA:   3'- gCGCGUCG------GCGCAGC-CG-------CUACaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 15489 0.66 0.39789
Target:  5'- aGCGCaacagGGCUGCucgCGGCGGUcaCCGGc -3'
miRNA:   3'- gCGCG-----UCGGCGca-GCCGCUAcaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 15648 0.66 0.39789
Target:  5'- gCGCGCcGCgCGaCGUCGGCaaacgcuUCCGGg -3'
miRNA:   3'- -GCGCGuCG-GC-GCAGCCGcuac---AGGCC- -5'
17041 3' -60.9 NC_004333.2 + 29155 0.66 0.39789
Target:  5'- gGCGUAGCCGacguaguaGUCGaGUGAcugGUCgGGc -3'
miRNA:   3'- gCGCGUCGGCg-------CAGC-CGCUa--CAGgCC- -5'
17041 3' -60.9 NC_004333.2 + 23893 0.67 0.389192
Target:  5'- uCGCGCAGUCGCcg-GGCGAcaauUUCGGg -3'
miRNA:   3'- -GCGCGUCGGCGcagCCGCUac--AGGCC- -5'
17041 3' -60.9 NC_004333.2 + 22175 0.67 0.389192
Target:  5'- uCGC-CGGCgGCGgcCGGCGGcgGUUCGGc -3'
miRNA:   3'- -GCGcGUCGgCGCa-GCCGCUa-CAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 3049 0.67 0.380619
Target:  5'- gGCaGCuGGCCGcCGUUGaCGAUGcCCGGa -3'
miRNA:   3'- gCG-CG-UCGGC-GCAGCcGCUACaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 18554 0.67 0.380619
Target:  5'- uGCgGCAGCCgGCG-CGGCGgcGaaUCCGa -3'
miRNA:   3'- gCG-CGUCGG-CGCaGCCGCuaC--AGGCc -5'
17041 3' -60.9 NC_004333.2 + 20209 0.67 0.380619
Target:  5'- gGCGCGGCuCGCGcuuucguggCGGCGAUcGaCCGc -3'
miRNA:   3'- gCGCGUCG-GCGCa--------GCCGCUA-CaGGCc -5'
17041 3' -60.9 NC_004333.2 + 33413 0.67 0.372174
Target:  5'- gGCGCAGCgacugCGCGcCGaaccguagccGCGA-GUCCGGc -3'
miRNA:   3'- gCGCGUCG-----GCGCaGC----------CGCUaCAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.