Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17041 | 5' | -54.4 | NC_004333.2 | + | 9426 | 0.73 | 0.328359 |
Target: 5'- uGCCGcUCGUgGCCGCuuccaUCGUCaUGCGg -3' miRNA: 3'- gCGGC-AGUAgUGGCGua---AGCAG-ACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 22499 | 0.66 | 0.73592 |
Target: 5'- gGCUGaUCAggUCGCCGCGUUCG-CgacgGCc -3' miRNA: 3'- gCGGC-AGU--AGUGGCGUAAGCaGa---CGc -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 1225 | 0.66 | 0.73592 |
Target: 5'- uGUCGUCGgcgcgCGCCGCcUUgG-CUGCGc -3' miRNA: 3'- gCGGCAGUa----GUGGCGuAAgCaGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 34644 | 0.66 | 0.725255 |
Target: 5'- cCGCCGgcggCAaCGCCGCGagcaCGUCggacgGCGa -3' miRNA: 3'- -GCGGCa---GUaGUGGCGUaa--GCAGa----CGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 2065 | 0.66 | 0.725255 |
Target: 5'- uGCCGUagcgcgCACCGCGcUCGgccaaggUUGCGg -3' miRNA: 3'- gCGGCAgua---GUGGCGUaAGCa------GACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 20881 | 0.67 | 0.681763 |
Target: 5'- gGCCG-CAUCAUCGguUUCGcCgGCu -3' miRNA: 3'- gCGGCaGUAGUGGCguAAGCaGaCGc -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 33329 | 0.67 | 0.680663 |
Target: 5'- cCGgCGUCAUUcugaucgGCaCGCcgUgGUCUGCGa -3' miRNA: 3'- -GCgGCAGUAG-------UG-GCGuaAgCAGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 36600 | 0.67 | 0.670741 |
Target: 5'- aCGUCGacaAUCAgCGCAUguggcaaucgCGUCUGCGc -3' miRNA: 3'- -GCGGCag-UAGUgGCGUAa---------GCAGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 45611 | 0.68 | 0.648597 |
Target: 5'- gGCCGUgAUUGCCGa--UCGUCUcGCa -3' miRNA: 3'- gCGGCAgUAGUGGCguaAGCAGA-CGc -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 17234 | 0.68 | 0.626392 |
Target: 5'- cCGCCGgcgUAUCGCCGgaCGUgaUCGUC-GCGa -3' miRNA: 3'- -GCGGCa--GUAGUGGC--GUA--AGCAGaCGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 41288 | 0.68 | 0.615291 |
Target: 5'- aCGCCGcUGUCGCCGCGauccgcUCGauggCUGCGc -3' miRNA: 3'- -GCGGCaGUAGUGGCGUa-----AGCa---GACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 36363 | 0.68 | 0.604206 |
Target: 5'- gCGCCGUCGcgcugaUgGCCGCGU-CGUacUUGCGc -3' miRNA: 3'- -GCGGCAGU------AgUGGCGUAaGCA--GACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 45799 | 0.69 | 0.549324 |
Target: 5'- gCGCCGUCAUgggcuaCGCCGCGUcgaucaacuUCcagCUGCGc -3' miRNA: 3'- -GCGGCAGUA------GUGGCGUA---------AGca-GACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 19204 | 0.69 | 0.549324 |
Target: 5'- gGCCGcgCAacugaUCGCCGCGUUCGaCcGCGu -3' miRNA: 3'- gCGGCa-GU-----AGUGGCGUAAGCaGaCGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 3671 | 0.7 | 0.52778 |
Target: 5'- gGCCGgCGUCcaguCCGgGUUCG-CUGCGa -3' miRNA: 3'- gCGGCaGUAGu---GGCgUAAGCaGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 34346 | 0.7 | 0.506558 |
Target: 5'- gCGcCCGUCGUCGaaccgUCGCcgUCG-CUGCGu -3' miRNA: 3'- -GC-GGCAGUAGU-----GGCGuaAGCaGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 16032 | 0.72 | 0.40684 |
Target: 5'- uGCCGacaGUCGCCGCGUUCGaCgUGCu -3' miRNA: 3'- gCGGCag-UAGUGGCGUAAGCaG-ACGc -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 2755 | 0.72 | 0.397556 |
Target: 5'- gCGCCGUCGcCGCCGCcgaaaccgaGUgccagGUCUGCGg -3' miRNA: 3'- -GCGGCAGUaGUGGCG---------UAag---CAGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 42943 | 0.66 | 0.750672 |
Target: 5'- gGCCGgcuUCAUCGCCGaauaccccgaGUUUGCGa -3' miRNA: 3'- gCGGC---AGUAGUGGCguaag-----CAGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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