miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17041 5' -54.4 NC_004333.2 + 267 0.69 0.578818
Target:  5'- gGUCGUCA-CGCCGCcgagcacggucacgGUcgaCGUCUGCGg -3'
miRNA:   3'- gCGGCAGUaGUGGCG--------------UAa--GCAGACGC- -5'
17041 5' -54.4 NC_004333.2 + 1225 0.66 0.73592
Target:  5'- uGUCGUCGgcgcgCGCCGCcUUgG-CUGCGc -3'
miRNA:   3'- gCGGCAGUa----GUGGCGuAAgCaGACGC- -5'
17041 5' -54.4 NC_004333.2 + 1605 0.73 0.350682
Target:  5'- uCGCCGUUuUCgACCGCAUccgggucgaaugcgUCGUCgGCGg -3'
miRNA:   3'- -GCGGCAGuAG-UGGCGUA--------------AGCAGaCGC- -5'
17041 5' -54.4 NC_004333.2 + 2065 0.66 0.725255
Target:  5'- uGCCGUagcgcgCACCGCGcUCGgccaaggUUGCGg -3'
miRNA:   3'- gCGGCAgua---GUGGCGUaAGCa------GACGC- -5'
17041 5' -54.4 NC_004333.2 + 2755 0.72 0.397556
Target:  5'- gCGCCGUCGcCGCCGCcgaaaccgaGUgccagGUCUGCGg -3'
miRNA:   3'- -GCGGCAGUaGUGGCG---------UAag---CAGACGC- -5'
17041 5' -54.4 NC_004333.2 + 3395 0.71 0.445299
Target:  5'- uCGCCGUCGUCGCgggaGC-UUCGgugaagaacagCUGCGg -3'
miRNA:   3'- -GCGGCAGUAGUGg---CGuAAGCa----------GACGC- -5'
17041 5' -54.4 NC_004333.2 + 3671 0.7 0.52778
Target:  5'- gGCCGgCGUCcaguCCGgGUUCG-CUGCGa -3'
miRNA:   3'- gCGGCaGUAGu---GGCgUAAGCaGACGC- -5'
17041 5' -54.4 NC_004333.2 + 3690 0.66 0.73592
Target:  5'- aGCCGUCgcGUCguaGCUGCGgaUCGUCUGg- -3'
miRNA:   3'- gCGGCAG--UAG---UGGCGUa-AGCAGACgc -5'
17041 5' -54.4 NC_004333.2 + 4915 0.66 0.736981
Target:  5'- gCGCCGUCGccauccaaaacaucgCGCCGUAcugCGUCUGg- -3'
miRNA:   3'- -GCGGCAGUa--------------GUGGCGUaa-GCAGACgc -5'
17041 5' -54.4 NC_004333.2 + 9408 0.67 0.692736
Target:  5'- uCGUCGUCuUCGCUGCccugCGggCUGCGc -3'
miRNA:   3'- -GCGGCAGuAGUGGCGuaa-GCa-GACGC- -5'
17041 5' -54.4 NC_004333.2 + 9426 0.73 0.328359
Target:  5'- uGCCGcUCGUgGCCGCuuccaUCGUCaUGCGg -3'
miRNA:   3'- gCGGC-AGUAgUGGCGua---AGCAG-ACGC- -5'
17041 5' -54.4 NC_004333.2 + 9800 0.71 0.455228
Target:  5'- aGCCGUCAUC-CgGCcgUCGUaugcCUGCc -3'
miRNA:   3'- gCGGCAGUAGuGgCGuaAGCA----GACGc -5'
17041 5' -54.4 NC_004333.2 + 15887 0.68 0.648597
Target:  5'- aGCCGcCGUgACCGCcaUCGUagacgaUGCGa -3'
miRNA:   3'- gCGGCaGUAgUGGCGuaAGCAg-----ACGC- -5'
17041 5' -54.4 NC_004333.2 + 16032 0.72 0.40684
Target:  5'- uGCCGacaGUCGCCGCGUUCGaCgUGCu -3'
miRNA:   3'- gCGGCag-UAGUGGCGUAAGCaG-ACGc -5'
17041 5' -54.4 NC_004333.2 + 17234 0.68 0.626392
Target:  5'- cCGCCGgcgUAUCGCCGgaCGUgaUCGUC-GCGa -3'
miRNA:   3'- -GCGGCa--GUAGUGGC--GUA--AGCAGaCGC- -5'
17041 5' -54.4 NC_004333.2 + 19204 0.69 0.549324
Target:  5'- gGCCGcgCAacugaUCGCCGCGUUCGaCcGCGu -3'
miRNA:   3'- gCGGCa-GU-----AGUGGCGUAAGCaGaCGC- -5'
17041 5' -54.4 NC_004333.2 + 20413 0.74 0.304809
Target:  5'- gCGCCGcUCGUCACCGCcUUCGaaaacacguUCgGCGg -3'
miRNA:   3'- -GCGGC-AGUAGUGGCGuAAGC---------AGaCGC- -5'
17041 5' -54.4 NC_004333.2 + 20745 0.66 0.756922
Target:  5'- uGCCGgaCAUCGCCGacg-CGgCUGCGc -3'
miRNA:   3'- gCGGCa-GUAGUGGCguaaGCaGACGC- -5'
17041 5' -54.4 NC_004333.2 + 20881 0.67 0.681763
Target:  5'- gGCCG-CAUCAUCGguUUCGcCgGCu -3'
miRNA:   3'- gCGGCaGUAGUGGCguAAGCaGaCGc -5'
17041 5' -54.4 NC_004333.2 + 22499 0.66 0.73592
Target:  5'- gGCUGaUCAggUCGCCGCGUUCG-CgacgGCc -3'
miRNA:   3'- gCGGC-AGU--AGUGGCGUAAGCaGa---CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.