miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17041 5' -54.4 NC_004333.2 + 17234 0.68 0.626392
Target:  5'- cCGCCGgcgUAUCGCCGgaCGUgaUCGUC-GCGa -3'
miRNA:   3'- -GCGGCa--GUAGUGGC--GUA--AGCAGaCGC- -5'
17041 5' -54.4 NC_004333.2 + 41288 0.68 0.615291
Target:  5'- aCGCCGcUGUCGCCGCGauccgcUCGauggCUGCGc -3'
miRNA:   3'- -GCGGCaGUAGUGGCGUa-----AGCa---GACGC- -5'
17041 5' -54.4 NC_004333.2 + 47135 0.68 0.604206
Target:  5'- gGCCGgaugaCAUCGCGUUCGUCcccgaUGCGc -3'
miRNA:   3'- gCGGCagua-GUGGCGUAAGCAG-----ACGC- -5'
17041 5' -54.4 NC_004333.2 + 36363 0.68 0.604206
Target:  5'- gCGCCGUCGcgcugaUgGCCGCGU-CGUacUUGCGc -3'
miRNA:   3'- -GCGGCAGU------AgUGGCGUAaGCA--GACGC- -5'
17041 5' -54.4 NC_004333.2 + 267 0.69 0.578818
Target:  5'- gGUCGUCA-CGCCGCcgagcacggucacgGUcgaCGUCUGCGg -3'
miRNA:   3'- gCGGCAGUaGUGGCG--------------UAa--GCAGACGC- -5'
17041 5' -54.4 NC_004333.2 + 45799 0.69 0.549324
Target:  5'- gCGCCGUCAUgggcuaCGCCGCGUcgaucaacuUCcagCUGCGc -3'
miRNA:   3'- -GCGGCAGUA------GUGGCGUA---------AGca-GACGC- -5'
17041 5' -54.4 NC_004333.2 + 19204 0.69 0.549324
Target:  5'- gGCCGcgCAacugaUCGCCGCGUUCGaCcGCGu -3'
miRNA:   3'- gCGGCa-GU-----AGUGGCGUAAGCaGaCGC- -5'
17041 5' -54.4 NC_004333.2 + 3671 0.7 0.52778
Target:  5'- gGCCGgCGUCcaguCCGgGUUCG-CUGCGa -3'
miRNA:   3'- gCGGCaGUAGu---GGCgUAAGCaGACGC- -5'
17041 5' -54.4 NC_004333.2 + 34346 0.7 0.506558
Target:  5'- gCGcCCGUCGUCGaaccgUCGCcgUCG-CUGCGu -3'
miRNA:   3'- -GC-GGCAGUAGU-----GGCGuaAGCaGACGC- -5'
17041 5' -54.4 NC_004333.2 + 9800 0.71 0.455228
Target:  5'- aGCCGUCAUC-CgGCcgUCGUaugcCUGCc -3'
miRNA:   3'- gCGGCAGUAGuGgCGuaAGCA----GACGc -5'
17041 5' -54.4 NC_004333.2 + 3395 0.71 0.445299
Target:  5'- uCGCCGUCGUCGCgggaGC-UUCGgugaagaacagCUGCGg -3'
miRNA:   3'- -GCGGCAGUAGUGg---CGuAAGCa----------GACGC- -5'
17041 5' -54.4 NC_004333.2 + 16032 0.72 0.40684
Target:  5'- uGCCGacaGUCGCCGCGUUCGaCgUGCu -3'
miRNA:   3'- gCGGCag-UAGUGGCGUAAGCaG-ACGc -5'
17041 5' -54.4 NC_004333.2 + 2755 0.72 0.397556
Target:  5'- gCGCCGUCGcCGCCGCcgaaaccgaGUgccagGUCUGCGg -3'
miRNA:   3'- -GCGGCAGUaGUGGCG---------UAag---CAGACGC- -5'
17041 5' -54.4 NC_004333.2 + 1605 0.73 0.350682
Target:  5'- uCGCCGUUuUCgACCGCAUccgggucgaaugcgUCGUCgGCGg -3'
miRNA:   3'- -GCGGCAGuAG-UGGCGUA--------------AGCAGaCGC- -5'
17041 5' -54.4 NC_004333.2 + 9426 0.73 0.328359
Target:  5'- uGCCGcUCGUgGCCGCuuccaUCGUCaUGCGg -3'
miRNA:   3'- gCGGC-AGUAgUGGCGua---AGCAG-ACGC- -5'
17041 5' -54.4 NC_004333.2 + 20413 0.74 0.304809
Target:  5'- gCGCCGcUCGUCACCGCcUUCGaaaacacguUCgGCGg -3'
miRNA:   3'- -GCGGC-AGUAGUGGCGuAAGC---------AGaCGC- -5'
17041 5' -54.4 NC_004333.2 + 23425 0.78 0.17541
Target:  5'- aGCgaUCGUCGCCGCGUUCGUgaGCGg -3'
miRNA:   3'- gCGgcAGUAGUGGCGUAAGCAgaCGC- -5'
17041 5' -54.4 NC_004333.2 + 27227 0.79 0.140571
Target:  5'- uCGCCGUCGUgAUCGCAg-CGUCUGCc -3'
miRNA:   3'- -GCGGCAGUAgUGGCGUaaGCAGACGc -5'
17041 5' -54.4 NC_004333.2 + 27463 1.1 0.00104
Target:  5'- gCGCCGUCAUCACCGCAUUCGUCUGCGa -3'
miRNA:   3'- -GCGGCAGUAGUGGCGUAAGCAGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.