Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17042 | 5' | -59.1 | NC_004333.2 | + | 17387 | 0.66 | 0.4563 |
Target: 5'- -cGAGCAGCGCaUcgagcugcucgcgcaGCGCGGUCACgaCGc -3' miRNA: 3'- ucCUCGUCGUG-A---------------CGCGCCGGUGaaGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 36357 | 0.66 | 0.432971 |
Target: 5'- uGGAGC-GCGCcgucGCGCugauGGCCGCgUCGu -3' miRNA: 3'- uCCUCGuCGUGa---CGCG----CCGGUGaAGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 40371 | 0.66 | 0.432971 |
Target: 5'- cGGuGCA-CACgccGCGCGGCCGacUCGa -3' miRNA: 3'- uCCuCGUcGUGa--CGCGCCGGUgaAGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 20892 | 0.66 | 0.432971 |
Target: 5'- -cGAGCccGGCGCaGCGCGuGCUACUUgGc -3' miRNA: 3'- ucCUCG--UCGUGaCGCGC-CGGUGAAgC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 41577 | 0.66 | 0.432971 |
Target: 5'- ---uGCGGCGCUGgGCGGCgCGCcgUGg -3' miRNA: 3'- uccuCGUCGUGACgCGCCG-GUGaaGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 22281 | 0.67 | 0.414071 |
Target: 5'- cAGG-GCGGCGaaGCGCGG-CGCUUgGc -3' miRNA: 3'- -UCCuCGUCGUgaCGCGCCgGUGAAgC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 20823 | 0.67 | 0.403895 |
Target: 5'- cGGGuAGCGGCuucCUGCccgacggGCGGCCGCg--- -3' miRNA: 3'- -UCC-UCGUCGu--GACG-------CGCCGGUGaagc -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 29886 | 0.67 | 0.395688 |
Target: 5'- cGGcGaAGCGCUGCGCgaucgGGCCGCgcgCGg -3' miRNA: 3'- uCCuCgUCGUGACGCG-----CCGGUGaa-GC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 16537 | 0.67 | 0.384024 |
Target: 5'- -cGAGCAGaucggccgacuguuCACgcGCGCGGCCACagCGg -3' miRNA: 3'- ucCUCGUC--------------GUGa-CGCGCCGGUGaaGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 39392 | 0.67 | 0.369119 |
Target: 5'- cGGcGCaaGGCAUUGC-CGGCgACUUCGc -3' miRNA: 3'- uCCuCG--UCGUGACGcGCCGgUGAAGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 30619 | 0.67 | 0.369119 |
Target: 5'- cAGGucgucguGCAGCGCuucggggaugUGCGCGaUCGCUUCGg -3' miRNA: 3'- -UCCu------CGUCGUG----------ACGCGCcGGUGAAGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 33412 | 0.67 | 0.369119 |
Target: 5'- cGGcGCAGCgACUGCGCGccgaaccguaGCCGCgagUCc -3' miRNA: 3'- uCCuCGUCG-UGACGCGC----------CGGUGa--AGc -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 44010 | 0.68 | 0.360539 |
Target: 5'- ---uGCAGCACgaGCGCGGCgCGCUg-- -3' miRNA: 3'- uccuCGUCGUGa-CGCGCCG-GUGAagc -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 20194 | 0.68 | 0.352099 |
Target: 5'- aAGGcGGCAGUAauggGCGCGGCuCGCgcuuUCGu -3' miRNA: 3'- -UCC-UCGUCGUga--CGCGCCG-GUGa---AGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 18550 | 0.68 | 0.352099 |
Target: 5'- cGGGuGCGGCAgccgGCGCGGCgGCg--- -3' miRNA: 3'- -UCCuCGUCGUga--CGCGCCGgUGaagc -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 36247 | 0.68 | 0.3438 |
Target: 5'- uGGAGC-GCGCguaauggcGCGCGcGCCGCUgCGc -3' miRNA: 3'- uCCUCGuCGUGa-------CGCGC-CGGUGAaGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 18190 | 0.68 | 0.341338 |
Target: 5'- uGGuGCucGCGCUcggcgccgguggcaGCGCGGCCGCgcUCGg -3' miRNA: 3'- uCCuCGu-CGUGA--------------CGCGCCGGUGa-AGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 16941 | 0.68 | 0.335642 |
Target: 5'- cGGcGCuGCGCcGCGCGGCCG--UCGc -3' miRNA: 3'- uCCuCGuCGUGaCGCGCCGGUgaAGC- -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 13894 | 0.68 | 0.335642 |
Target: 5'- cGGccGGCAcGgGCUGCGCGGCgGCUg-- -3' miRNA: 3'- uCC--UCGU-CgUGACGCGCCGgUGAagc -5' |
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17042 | 5' | -59.1 | NC_004333.2 | + | 24121 | 0.68 | 0.327627 |
Target: 5'- cGGAcagucGCAGCGCgcaauguuCGCGGCCGcCUUCa -3' miRNA: 3'- uCCU-----CGUCGUGac------GCGCCGGU-GAAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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