miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17042 5' -59.1 NC_004333.2 + 1411 0.7 0.24882
Target:  5'- -cGAGCAGCGCg--GCGGaCACUUCGa -3'
miRNA:   3'- ucCUCGUCGUGacgCGCCgGUGAAGC- -5'
17042 5' -59.1 NC_004333.2 + 7844 0.71 0.224304
Target:  5'- -cGAcGCGGC-CUGCGcCGGCCAUUUCc -3'
miRNA:   3'- ucCU-CGUCGuGACGC-GCCGGUGAAGc -5'
17042 5' -59.1 NC_004333.2 + 13894 0.68 0.335642
Target:  5'- cGGccGGCAcGgGCUGCGCGGCgGCUg-- -3'
miRNA:   3'- uCC--UCGU-CgUGACGCGCCGgUGAagc -5'
17042 5' -59.1 NC_004333.2 + 15169 0.72 0.181413
Target:  5'- gAGcGAGCGGCAgUGCGUaGGUCGCgUUCGc -3'
miRNA:   3'- -UC-CUCGUCGUgACGCG-CCGGUG-AAGC- -5'
17042 5' -59.1 NC_004333.2 + 16537 0.67 0.384024
Target:  5'- -cGAGCAGaucggccgacuguuCACgcGCGCGGCCACagCGg -3'
miRNA:   3'- ucCUCGUC--------------GUGa-CGCGCCGGUGaaGC- -5'
17042 5' -59.1 NC_004333.2 + 16845 0.71 0.230234
Target:  5'- -cGAGCAGCGC-GuCGCGGCCAaggCGa -3'
miRNA:   3'- ucCUCGUCGUGaC-GCGCCGGUgaaGC- -5'
17042 5' -59.1 NC_004333.2 + 16941 0.68 0.335642
Target:  5'- cGGcGCuGCGCcGCGCGGCCG--UCGc -3'
miRNA:   3'- uCCuCGuCGUGaCGCGCCGGUgaAGC- -5'
17042 5' -59.1 NC_004333.2 + 17387 0.66 0.4563
Target:  5'- -cGAGCAGCGCaUcgagcugcucgcgcaGCGCGGUCACgaCGc -3'
miRNA:   3'- ucCUCGUCGUG-A---------------CGCGCCGGUGaaGC- -5'
17042 5' -59.1 NC_004333.2 + 18190 0.68 0.341338
Target:  5'- uGGuGCucGCGCUcggcgccgguggcaGCGCGGCCGCgcUCGg -3'
miRNA:   3'- uCCuCGu-CGUGA--------------CGCGCCGGUGa-AGC- -5'
17042 5' -59.1 NC_004333.2 + 18550 0.68 0.352099
Target:  5'- cGGGuGCGGCAgccgGCGCGGCgGCg--- -3'
miRNA:   3'- -UCCuCGUCGUga--CGCGCCGgUGaagc -5'
17042 5' -59.1 NC_004333.2 + 20194 0.68 0.352099
Target:  5'- aAGGcGGCAGUAauggGCGCGGCuCGCgcuuUCGu -3'
miRNA:   3'- -UCC-UCGUCGUga--CGCGCCG-GUGa---AGC- -5'
17042 5' -59.1 NC_004333.2 + 20823 0.67 0.403895
Target:  5'- cGGGuAGCGGCuucCUGCccgacggGCGGCCGCg--- -3'
miRNA:   3'- -UCC-UCGUCGu--GACG-------CGCCGGUGaagc -5'
17042 5' -59.1 NC_004333.2 + 20892 0.66 0.432971
Target:  5'- -cGAGCccGGCGCaGCGCGuGCUACUUgGc -3'
miRNA:   3'- ucCUCG--UCGUGaCGCGC-CGGUGAAgC- -5'
17042 5' -59.1 NC_004333.2 + 22281 0.67 0.414071
Target:  5'- cAGG-GCGGCGaaGCGCGG-CGCUUgGc -3'
miRNA:   3'- -UCCuCGUCGUgaCGCGCCgGUGAAgC- -5'
17042 5' -59.1 NC_004333.2 + 24121 0.68 0.327627
Target:  5'- cGGAcagucGCAGCGCgcaauguuCGCGGCCGcCUUCa -3'
miRNA:   3'- uCCU-----CGUCGUGac------GCGCCGGU-GAAGc -5'
17042 5' -59.1 NC_004333.2 + 27144 1.08 0.000375
Target:  5'- cAGGAGCAGCACUGCGCGGCCACUUCGu -3'
miRNA:   3'- -UCCUCGUCGUGACGCGCCGGUGAAGC- -5'
17042 5' -59.1 NC_004333.2 + 27334 0.73 0.162812
Target:  5'- -cGAGCAGga-UGCGCGGCCGCccgUCGg -3'
miRNA:   3'- ucCUCGUCgugACGCGCCGGUGa--AGC- -5'
17042 5' -59.1 NC_004333.2 + 27662 0.71 0.230234
Target:  5'- cAGcGAGCGGCGCgGCgGCGGCCgGCagCGg -3'
miRNA:   3'- -UC-CUCGUCGUGaCG-CGCCGG-UGaaGC- -5'
17042 5' -59.1 NC_004333.2 + 27779 0.7 0.24882
Target:  5'- -cGAGCGGCGCgGCcacuGCGGCCACg--- -3'
miRNA:   3'- ucCUCGUCGUGaCG----CGCCGGUGaagc -5'
17042 5' -59.1 NC_004333.2 + 28739 0.68 0.319754
Target:  5'- cAGGucGGcCAGCAaCUGCGCGagcGCCGCgUCGa -3'
miRNA:   3'- -UCC--UC-GUCGU-GACGCGC---CGGUGaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.