miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 3' -51.4 NC_004333.2 + 10549 0.66 0.874309
Target:  5'- uCCGgcggGAUGuCGCGCGUGAcaucaUGCagcaCCGGc -3'
miRNA:   3'- -GGUaa--CUAC-GCGUGCAUU-----ACGg---GGCU- -5'
17043 3' -51.4 NC_004333.2 + 255 0.66 0.857654
Target:  5'- gCCGUUcGAUGUGguCGUcacGCCgCCGAg -3'
miRNA:   3'- -GGUAA-CUACGCguGCAuuaCGG-GGCU- -5'
17043 3' -51.4 NC_004333.2 + 34848 0.66 0.857654
Target:  5'- ---cUGAcGUGCACGUggcguuauaGAUGCCCUGu -3'
miRNA:   3'- gguaACUaCGCGUGCA---------UUACGGGGCu -5'
17043 3' -51.4 NC_004333.2 + 19707 0.67 0.839992
Target:  5'- gCGUUGcgacugugGCGCGCGUAAcugGCggCCCGAc -3'
miRNA:   3'- gGUAACua------CGCGUGCAUUa--CG--GGGCU- -5'
17043 3' -51.4 NC_004333.2 + 18185 0.67 0.839992
Target:  5'- gCCGggUGAUGCGCuCGUcGUGCgCgCGGc -3'
miRNA:   3'- -GGUa-ACUACGCGuGCAuUACG-GgGCU- -5'
17043 3' -51.4 NC_004333.2 + 6463 0.67 0.830805
Target:  5'- cUCGUUGAUcGCGC-CGUGccG-CCCGAa -3'
miRNA:   3'- -GGUAACUA-CGCGuGCAUuaCgGGGCU- -5'
17043 3' -51.4 NC_004333.2 + 27035 0.68 0.801949
Target:  5'- gUCGaUGAUGCGCACGgccuuuaCCUCGAc -3'
miRNA:   3'- -GGUaACUACGCGUGCauuac--GGGGCU- -5'
17043 3' -51.4 NC_004333.2 + 4456 0.69 0.75022
Target:  5'- gCCAUUGuUGCGaCGCGUcaGGUGCcaaCCCGc -3'
miRNA:   3'- -GGUAACuACGC-GUGCA--UUACG---GGGCu -5'
17043 3' -51.4 NC_004333.2 + 28594 0.69 0.728541
Target:  5'- gUCGUUGAUcGCGCGCGauuccccuuGUGCCgcgCCGAc -3'
miRNA:   3'- -GGUAACUA-CGCGUGCau-------UACGG---GGCU- -5'
17043 3' -51.4 NC_004333.2 + 3785 0.69 0.728541
Target:  5'- gCCGUUGuaccGCGCACGc---GCCgCCGAg -3'
miRNA:   3'- -GGUAACua--CGCGUGCauuaCGG-GGCU- -5'
17043 3' -51.4 NC_004333.2 + 25127 0.69 0.727446
Target:  5'- aCGgcGgcGCGCACGUucgcggccugcccGAUGCCuCCGAu -3'
miRNA:   3'- gGUaaCuaCGCGUGCA-------------UUACGG-GGCU- -5'
17043 3' -51.4 NC_004333.2 + 45254 0.69 0.717542
Target:  5'- gCAUcGAaGCGCGCGUGGcGCCuuGGc -3'
miRNA:   3'- gGUAaCUaCGCGUGCAUUaCGGggCU- -5'
17043 3' -51.4 NC_004333.2 + 45961 0.7 0.695284
Target:  5'- ----gGAUGUGUcgcggcgagGCGUGGUGUCCCGGc -3'
miRNA:   3'- gguaaCUACGCG---------UGCAUUACGGGGCU- -5'
17043 3' -51.4 NC_004333.2 + 4248 0.71 0.627326
Target:  5'- gCGUgagGAUgccGCGCACGUucGUGCgCCCGGu -3'
miRNA:   3'- gGUAa--CUA---CGCGUGCAu-UACG-GGGCU- -5'
17043 3' -51.4 NC_004333.2 + 32222 0.77 0.314976
Target:  5'- aCCugcUGAaagUGCGCaACGUGAcuUGCCCCGAu -3'
miRNA:   3'- -GGua-ACU---ACGCG-UGCAUU--ACGGGGCU- -5'
17043 3' -51.4 NC_004333.2 + 24041 0.77 0.29848
Target:  5'- uCCAUcgGAUGCGCGauguCGUAGccgacauagcacuUGCCCCGAu -3'
miRNA:   3'- -GGUAa-CUACGCGU----GCAUU-------------ACGGGGCU- -5'
17043 3' -51.4 NC_004333.2 + 26977 1.12 0.001399
Target:  5'- cCCAUUGAUGCGCACGUAAUGCCCCGAg -3'
miRNA:   3'- -GGUAACUACGCGUGCAUUACGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.