miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 14683 0.66 0.386275
Target:  5'- aGCUUGuCGGCcgagugcaGGUGUGGcacgAGUGCGCCAa -3'
miRNA:   3'- -CGGAC-GCCG--------UCGCGCU----UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 14876 0.66 0.386275
Target:  5'- -gCUGCuGCAgGCGCGucAGCaGCACCGa -3'
miRNA:   3'- cgGACGcCGU-CGCGCu-UCG-CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 6771 0.66 0.386275
Target:  5'- cGCCUcgaGGUAGC-CGAucgcauacgacAGCGCGCCGa -3'
miRNA:   3'- -CGGAcg-CCGUCGcGCU-----------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 2954 0.66 0.377456
Target:  5'- cCCUGCaGCuGCGCGAGcGUGaCGCCc- -3'
miRNA:   3'- cGGACGcCGuCGCGCUU-CGC-GUGGua -5'
17043 5' -60.6 NC_004333.2 + 44004 0.66 0.368773
Target:  5'- cGCC-GCuGCAGCacgaGCGcGGCGCGCUGUa -3'
miRNA:   3'- -CGGaCGcCGUCG----CGCuUCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 32689 0.66 0.368773
Target:  5'- cGCC-GCGaGCAGCccuguuGCGcucggcacgccAAGCGCGCCGa -3'
miRNA:   3'- -CGGaCGC-CGUCG------CGC-----------UUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 31152 0.66 0.368773
Target:  5'- gGCCUGCaGCgugcacgagucgAGCGCGGcgacGGCGUauGCCGc -3'
miRNA:   3'- -CGGACGcCG------------UCGCGCU----UCGCG--UGGUa -5'
17043 5' -60.6 NC_004333.2 + 40726 0.66 0.363629
Target:  5'- aCCgGCGGCGGCaagucgcuccugaacGCGAugcugaucgAGCGCAUCGc -3'
miRNA:   3'- cGGaCGCCGUCG---------------CGCU---------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 9456 0.66 0.360228
Target:  5'- uCCUGCGcaccaGGCGCGGGuGCcGCACCGc -3'
miRNA:   3'- cGGACGCcg---UCGCGCUU-CG-CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 8983 0.66 0.360228
Target:  5'- gGCCgugcGCGGCGGCGacCGAcgcGGCGUucgcggcuuGCCAg -3'
miRNA:   3'- -CGGa---CGCCGUCGC--GCU---UCGCG---------UGGUa -5'
17043 5' -60.6 NC_004333.2 + 46105 0.66 0.360228
Target:  5'- aCCU-UGGCcgAGCGCGguGCGCGCUAc -3'
miRNA:   3'- cGGAcGCCG--UCGCGCuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 44953 0.66 0.360228
Target:  5'- uGCCcgGCGucauCGGgGCGGgcGGCGCGCCGg -3'
miRNA:   3'- -CGGa-CGCc---GUCgCGCU--UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 39150 0.66 0.360228
Target:  5'- cGCCaaaGGCAGCG---AGCGCGCCGc -3'
miRNA:   3'- -CGGacgCCGUCGCgcuUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 38931 0.66 0.352656
Target:  5'- uGCCgcacGCGGCgaggcgcccccguucGGCGCGAuggaugcgaagucgGuGCGCACCGc -3'
miRNA:   3'- -CGGa---CGCCG---------------UCGCGCU--------------U-CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 11911 0.66 0.351822
Target:  5'- gGCCcggcaUGCGcaGCGGCGC---GCGCGCCAUu -3'
miRNA:   3'- -CGG-----ACGC--CGUCGCGcuuCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 30699 0.66 0.343556
Target:  5'- --gUGCGaGCAGCGUGA-GCGCGgCGg -3'
miRNA:   3'- cggACGC-CGUCGCGCUuCGCGUgGUa -5'
17043 5' -60.6 NC_004333.2 + 9997 0.66 0.343556
Target:  5'- aGCUUcuCGGCGGCcauuGCGAgcGGCGUGCCAa -3'
miRNA:   3'- -CGGAc-GCCGUCG----CGCU--UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 433 0.66 0.341104
Target:  5'- gGCUgcGCGGCAGUGCGGaacgcaaucuucacGGCGUuuguGCCGc -3'
miRNA:   3'- -CGGa-CGCCGUCGCGCU--------------UCGCG----UGGUa -5'
17043 5' -60.6 NC_004333.2 + 27434 0.66 0.336237
Target:  5'- aGCCgcgucggcgaugucCGGCAGCGC---GCGCGCCGUc -3'
miRNA:   3'- -CGGac------------GCCGUCGCGcuuCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 9269 0.66 0.335431
Target:  5'- uGCUUGuUGGCcgugccgaucAGCGCGAAGCgGCGCgGg -3'
miRNA:   3'- -CGGAC-GCCG----------UCGCGCUUCG-CGUGgUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.