miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 9269 0.66 0.335431
Target:  5'- uGCUUGuUGGCcgugccgaucAGCGCGAAGCgGCGCgGg -3'
miRNA:   3'- -CGGAC-GCCG----------UCGCGCUUCG-CGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 4775 0.66 0.335431
Target:  5'- uGCCUGCgcgGGCGGCuGCGGGaccauagcgauuGCGCGuucCCAUg -3'
miRNA:   3'- -CGGACG---CCGUCG-CGCUU------------CGCGU---GGUA- -5'
17043 5' -60.6 NC_004333.2 + 14876 0.66 0.386275
Target:  5'- -gCUGCuGCAgGCGCGucAGCaGCACCGa -3'
miRNA:   3'- cgGACGcCGU-CGCGCu-UCG-CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 31152 0.66 0.368773
Target:  5'- gGCCUGCaGCgugcacgagucgAGCGCGGcgacGGCGUauGCCGc -3'
miRNA:   3'- -CGGACGcCG------------UCGCGCU----UCGCG--UGGUa -5'
17043 5' -60.6 NC_004333.2 + 44382 0.67 0.296928
Target:  5'- uGCgCUGCucGGCGGCGCGu-GCGCGgUAc -3'
miRNA:   3'- -CG-GACG--CCGUCGCGCuuCGCGUgGUa -5'
17043 5' -60.6 NC_004333.2 + 37413 0.67 0.327447
Target:  5'- cGCUcGCGGUuuGCGCGgcGUGCACg-- -3'
miRNA:   3'- -CGGaCGCCGu-CGCGCuuCGCGUGgua -5'
17043 5' -60.6 NC_004333.2 + 29966 0.67 0.296928
Target:  5'- uGCCgagcGCGGCcgcgcugccaccGGCGCcGAGCGCgagcACCAUg -3'
miRNA:   3'- -CGGa---CGCCG------------UCGCGcUUCGCG----UGGUA- -5'
17043 5' -60.6 NC_004333.2 + 21990 0.67 0.304345
Target:  5'- gGCCguuuucuuUGCGuCGGCGCGAaucAGCGCGCgGg -3'
miRNA:   3'- -CGG--------ACGCcGUCGCGCU---UCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 13955 0.67 0.304345
Target:  5'- cGCCUuggcgacuucagGCGGCGGC-CGguGCGCGCgAg -3'
miRNA:   3'- -CGGA------------CGCCGUCGcGCuuCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 22176 0.67 0.319605
Target:  5'- cGCCgGCGGCGGCcggcgGCGGuucGGCgGCugCGg -3'
miRNA:   3'- -CGGaCGCCGUCG-----CGCU---UCG-CGugGUa -5'
17043 5' -60.6 NC_004333.2 + 25631 0.67 0.319605
Target:  5'- uGCCcuUGCGGCgucgucAGCGCGGucgaaAGCGUcuuGCCGg -3'
miRNA:   3'- -CGG--ACGCCG------UCGCGCU-----UCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 22113 0.67 0.304345
Target:  5'- cGCCgccGCuGCGGCGCcAcuggcaaauccGGCGCACCGUc -3'
miRNA:   3'- -CGGa--CGcCGUCGCGcU-----------UCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 15428 0.67 0.302105
Target:  5'- gGCCgGCGGCAGCGaccuGCGCgugacguucugcucGCCGg -3'
miRNA:   3'- -CGGaCGCCGUCGCgcuuCGCG--------------UGGUa -5'
17043 5' -60.6 NC_004333.2 + 39865 0.67 0.289652
Target:  5'- cGCauaGCGG-GGCGCGAGccccGCGCGCCGc -3'
miRNA:   3'- -CGga-CGCCgUCGCGCUU----CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 9699 0.67 0.296194
Target:  5'- uGCCgucccauUGCGGCAGCGCaaucaucgcGuCGCGCCAc -3'
miRNA:   3'- -CGG-------ACGCCGUCGCGcuu------C-GCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 8305 0.67 0.311904
Target:  5'- ---gGCGGC-GCGCGggGCucGCGCCc- -3'
miRNA:   3'- cggaCGCCGuCGCGCuuCG--CGUGGua -5'
17043 5' -60.6 NC_004333.2 + 12288 0.67 0.312668
Target:  5'- gGCac-CGGCGGCGCGcauugcggcguccuGCGCGCCAg -3'
miRNA:   3'- -CGgacGCCGUCGCGCuu------------CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 44414 0.67 0.311904
Target:  5'- gGCCUGCcgggcucgcuGGCuggugcGUGCGAGGCGCucgGCCu- -3'
miRNA:   3'- -CGGACG----------CCGu-----CGCGCUUCGCG---UGGua -5'
17043 5' -60.6 NC_004333.2 + 31228 0.67 0.311904
Target:  5'- uGCCggucgcGaCGGCcGCGCGgcGCaGCGCCGUc -3'
miRNA:   3'- -CGGa-----C-GCCGuCGCGCuuCG-CGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 8870 0.67 0.319605
Target:  5'- ---cGCGGCugcGGCGCGGuuagccGCGCACCu- -3'
miRNA:   3'- cggaCGCCG---UCGCGCUu-----CGCGUGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.