Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17043 | 5' | -60.6 | NC_004333.2 | + | 27011 | 1.06 | 0.000321 |
Target: 5'- gGCCUGCGGCAGCGCGAAGCGCACCAUc -3' miRNA: 3'- -CGGACGCCGUCGCGCUUCGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 8837 | 0.8 | 0.035258 |
Target: 5'- uGCCUGCGGU-GCGUcguaGAAGCGCGCCGc -3' miRNA: 3'- -CGGACGCCGuCGCG----CUUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 33406 | 0.8 | 0.037372 |
Target: 5'- uGCCUGCGGC-GCaGCGAcuGCGCGCCGa -3' miRNA: 3'- -CGGACGCCGuCG-CGCUu-CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 44455 | 0.78 | 0.049949 |
Target: 5'- cGCCcGgGGguGCGCGAGGCGCucaACCAg -3' miRNA: 3'- -CGGaCgCCguCGCGCUUCGCG---UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 15283 | 0.78 | 0.052919 |
Target: 5'- -gCUGCGGCGGCGCGGucAGCaucaGCACCGg -3' miRNA: 3'- cgGACGCCGUCGCGCU--UCG----CGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 46938 | 0.76 | 0.07468 |
Target: 5'- aGCCUcGCGcGCAGCcaagGCGgcGCGCGCCGa -3' miRNA: 3'- -CGGA-CGC-CGUCG----CGCuuCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 41568 | 0.76 | 0.070534 |
Target: 5'- aCCUGCGacuGCGGCGCuGGgcGGCGCGCCGUg -3' miRNA: 3'- cGGACGC---CGUCGCG-CU--UCGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 29381 | 0.75 | 0.079059 |
Target: 5'- cCCUGCGGCcGCGCGAuaAGCGCGguUCAg -3' miRNA: 3'- cGGACGCCGuCGCGCU--UCGCGU--GGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 20427 | 0.75 | 0.082738 |
Target: 5'- cGCCUucgaaaacacguuCGGCGGCGCGAAGCcuGCGCCGg -3' miRNA: 3'- -CGGAc------------GCCGUCGCGCUUCG--CGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 7407 | 0.74 | 0.101976 |
Target: 5'- uGCCUGCGGCcaggucuGCGCGAuGCGCucgAUCAg -3' miRNA: 3'- -CGGACGCCGu------CGCGCUuCGCG---UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 5616 | 0.74 | 0.099149 |
Target: 5'- gGCCgUGCGGCAGCuuGCaGGcaacGCGCACCAUg -3' miRNA: 3'- -CGG-ACGCCGUCG--CG-CUu---CGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 18206 | 0.73 | 0.12399 |
Target: 5'- cGCCgGUGGCAGCGCGGc-CGCGCUc- -3' miRNA: 3'- -CGGaCGCCGUCGCGCUucGCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 15763 | 0.73 | 0.127474 |
Target: 5'- cGUCaGCGaGCuGCGCGAGGCGCggGCCGa -3' miRNA: 3'- -CGGaCGC-CGuCGCGCUUCGCG--UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 31865 | 0.73 | 0.109994 |
Target: 5'- uGCCUgcaucugcugaaucGCGGCAaGCcauGCGAAGCGUGCCAa -3' miRNA: 3'- -CGGA--------------CGCCGU-CG---CGCUUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 15718 | 0.72 | 0.134345 |
Target: 5'- -gCUGCGGCucgucgcGGCGCuGAAGgGCGCCGa -3' miRNA: 3'- cgGACGCCG-------UCGCG-CUUCgCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 17499 | 0.72 | 0.133975 |
Target: 5'- cGCCgGCGGCGGCGCGAacggcuucaugaaGGUGCucgagcagcgcacGCCGc -3' miRNA: 3'- -CGGaCGCCGUCGCGCU-------------UCGCG-------------UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 42006 | 0.72 | 0.142334 |
Target: 5'- uCCUGuCGGUGcGCGUGAAGCGCgcgGCCAa -3' miRNA: 3'- cGGAC-GCCGU-CGCGCUUCGCG---UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 39326 | 0.71 | 0.167605 |
Target: 5'- cGCUcgGCGGCGGCGCGcuucuacGaCGCACCGc -3' miRNA: 3'- -CGGa-CGCCGUCGCGCuu-----C-GCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 6646 | 0.71 | 0.16313 |
Target: 5'- cGCgCU-CGGCAGCGCGcucGGCGCGCUc- -3' miRNA: 3'- -CG-GAcGCCGUCGCGCu--UCGCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 993 | 0.71 | 0.157046 |
Target: 5'- uGCCUcugcugcGCGGCAGCGCGuucuuccggcgucaGAuGCGCAUCGg -3' miRNA: 3'- -CGGA-------CGCCGUCGCGC--------------UU-CGCGUGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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