Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17043 | 5' | -60.6 | NC_004333.2 | + | 6646 | 0.71 | 0.16313 |
Target: 5'- cGCgCU-CGGCAGCGCGcucGGCGCGCUc- -3' miRNA: 3'- -CG-GAcGCCGUCGCGCu--UCGCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 3916 | 0.71 | 0.175465 |
Target: 5'- cGCCagGCGGCAGCgGCGGcaGGCcgaccggcagguugGCGCCGUu -3' miRNA: 3'- -CGGa-CGCCGUCG-CGCU--UCG--------------CGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 30621 | 0.71 | 0.172189 |
Target: 5'- cGCCaggucgUGCaGCAGCGCGGcaaGGCGCGgCGUg -3' miRNA: 3'- -CGG------ACGcCGUCGCGCU---UCGCGUgGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 19288 | 0.7 | 0.18024 |
Target: 5'- gGCCUGCGccgagcgcgaucgcGCGGCacgaGCGcuuGAGCGCGCCGg -3' miRNA: 3'- -CGGACGC--------------CGUCG----CGC---UUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 9478 | 0.7 | 0.18662 |
Target: 5'- cGCCgGCGGCuGCGgGAauuucAGCGCggcgGCCAg -3' miRNA: 3'- -CGGaCGCCGuCGCgCU-----UCGCG----UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 6812 | 0.7 | 0.191662 |
Target: 5'- uGCUUGCGGUcgGGCGCGu-GCucgaGCGCCAc -3' miRNA: 3'- -CGGACGCCG--UCGCGCuuCG----CGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 25425 | 0.7 | 0.181695 |
Target: 5'- uGCCgGCGGCGGCcgucacGCcGGGCGUGCCGg -3' miRNA: 3'- -CGGaCGCCGUCG------CGcUUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 27659 | 0.7 | 0.207511 |
Target: 5'- cGCCaGCGaGCGGCGCGGcGGCG-GCCGg -3' miRNA: 3'- -CGGaCGC-CGUCGCGCU-UCGCgUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 28781 | 0.7 | 0.183651 |
Target: 5'- gGUC-GCGGCGGCGCGAcuucccaucgcguauAGUGCGuCCAc -3' miRNA: 3'- -CGGaCGCCGUCGCGCU---------------UCGCGU-GGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 47825 | 0.7 | 0.207511 |
Target: 5'- cGCCUGCGGaCGGCGCuucuuuggagguGAgcauguggcucGGCGCGCUu- -3' miRNA: 3'- -CGGACGCC-GUCGCG------------CU-----------UCGCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 43309 | 0.69 | 0.218696 |
Target: 5'- gGUCaGCGGCGGCaGCGGcaucggcacGGCGCGCgCGUa -3' miRNA: 3'- -CGGaCGCCGUCG-CGCU---------UCGCGUG-GUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 3989 | 0.69 | 0.218125 |
Target: 5'- -gUUGCGGCGuuuagcugcuGCGUGAccucgaaGGCGCACCAg -3' miRNA: 3'- cgGACGCCGU----------CGCGCU-------UCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 39057 | 0.69 | 0.230392 |
Target: 5'- aGCCgGaCGGCGaguacGCGCGAcucGUGCGCCGUg -3' miRNA: 3'- -CGGaC-GCCGU-----CGCGCUu--CGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 25932 | 0.69 | 0.224479 |
Target: 5'- aGCUauUGCGcGCGGCGCGAugccGGCG-GCCAg -3' miRNA: 3'- -CGG--ACGC-CGUCGCGCU----UCGCgUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 41519 | 0.69 | 0.218696 |
Target: 5'- cGCCUGCucgAGCGCGccGAGCGCGCUg- -3' miRNA: 3'- -CGGACGccgUCGCGC--UUCGCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 35775 | 0.69 | 0.230392 |
Target: 5'- gGCCgaaGGCGGCGacacuGGCGCGCCGg -3' miRNA: 3'- -CGGacgCCGUCGCgcu--UCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 3154 | 0.69 | 0.228604 |
Target: 5'- cGCCaGCGcCAcGCGCGGucgagcggccggacAGCGCGCCGUg -3' miRNA: 3'- -CGGaCGCcGU-CGCGCU--------------UCGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 22279 | 0.69 | 0.223312 |
Target: 5'- cGCaggGCGGCgaAGCGCGGcgcuuggcgcucGCGCACCAa -3' miRNA: 3'- -CGga-CGCCG--UCGCGCUu-----------CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 45486 | 0.69 | 0.222151 |
Target: 5'- gGCCUGuCGGCcgccgccGGCGCGAcgcugcaagcugccGGCGUugCGg -3' miRNA: 3'- -CGGAC-GCCG-------UCGCGCU--------------UCGCGugGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 38706 | 0.69 | 0.21304 |
Target: 5'- aGCUcgGCGGCGGUGCGGcaccCGCGCCu- -3' miRNA: 3'- -CGGa-CGCCGUCGCGCUuc--GCGUGGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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