Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17043 | 5' | -60.6 | NC_004333.2 | + | 3154 | 0.69 | 0.228604 |
Target: 5'- cGCCaGCGcCAcGCGCGGucgagcggccggacAGCGCGCCGUg -3' miRNA: 3'- -CGGaCGCcGU-CGCGCU--------------UCGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 22279 | 0.69 | 0.223312 |
Target: 5'- cGCaggGCGGCgaAGCGCGGcgcuuggcgcucGCGCACCAa -3' miRNA: 3'- -CGga-CGCCG--UCGCGCUu-----------CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 29313 | 0.68 | 0.255365 |
Target: 5'- cGCCccgGCGGCAaUGCGuuGCGCACgGc -3' miRNA: 3'- -CGGa--CGCCGUcGCGCuuCGCGUGgUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 9177 | 0.68 | 0.248284 |
Target: 5'- cGCUUGCguucguucgcgacGGCAGUGuCGAucgcgguGCGCACCGa -3' miRNA: 3'- -CGGACG-------------CCGUCGC-GCUu------CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 11816 | 0.68 | 0.275521 |
Target: 5'- ---cGCGGCcaucAGCGCGAcGGCGCGCUc- -3' miRNA: 3'- cggaCGCCG----UCGCGCU-UCGCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 5197 | 0.68 | 0.268664 |
Target: 5'- cGCCUGCa--GGCGCGgcGUcgGCACCGUc -3' miRNA: 3'- -CGGACGccgUCGCGCuuCG--CGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 25868 | 0.68 | 0.261946 |
Target: 5'- aUCUGCaGCAGCGCuuGGUGCGCgAg -3' miRNA: 3'- cGGACGcCGUCGCGcuUCGCGUGgUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 42097 | 0.68 | 0.267986 |
Target: 5'- -gCUGCgcgacgaGGCGuGuCGCGAGGUGCGCCAg -3' miRNA: 3'- cgGACG-------CCGU-C-GCGCUUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 36083 | 0.68 | 0.261946 |
Target: 5'- gGCCcGUGacGCGGCGCu--GCGCGCCAg -3' miRNA: 3'- -CGGaCGC--CGUCGCGcuuCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 47474 | 0.68 | 0.261946 |
Target: 5'- cGCCgGCGGCGacugccGCGCugaacGAGGCGCcgGCCGg -3' miRNA: 3'- -CGGaCGCCGU------CGCG-----CUUCGCG--UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 34416 | 0.68 | 0.282516 |
Target: 5'- cGCCgcGCGaGCGGCGCGcGGCGUcCUAc -3' miRNA: 3'- -CGGa-CGC-CGUCGCGCuUCGCGuGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 30135 | 0.68 | 0.261946 |
Target: 5'- aGCa-GCgGGCAGCGCGAucAGCGCguagaacucgGCCGg -3' miRNA: 3'- -CGgaCG-CCGUCGCGCU--UCGCG----------UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 28761 | 0.68 | 0.261946 |
Target: 5'- cGUC-GCgGGUAGCGCGGcguaggcguAGCGCAUCAg -3' miRNA: 3'- -CGGaCG-CCGUCGCGCU---------UCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 38458 | 0.68 | 0.261946 |
Target: 5'- cGCCgacGCGGCGuuuCGCGAAccgcGUGCGCCGa -3' miRNA: 3'- -CGGa--CGCCGUc--GCGCUU----CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 4722 | 0.68 | 0.282516 |
Target: 5'- -aUUGCGGC-GCGC-AAGCGCGCgAUg -3' miRNA: 3'- cgGACGCCGuCGCGcUUCGCGUGgUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 34712 | 0.67 | 0.327447 |
Target: 5'- cGCCUGCGcauucGCGaCGCGguGCGCACgAc -3' miRNA: 3'- -CGGACGC-----CGUcGCGCuuCGCGUGgUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 39865 | 0.67 | 0.289652 |
Target: 5'- cGCauaGCGG-GGCGCGAGccccGCGCGCCGc -3' miRNA: 3'- -CGga-CGCCgUCGCGCUU----CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 22113 | 0.67 | 0.304345 |
Target: 5'- cGCCgccGCuGCGGCGCcAcuggcaaauccGGCGCACCGUc -3' miRNA: 3'- -CGGa--CGcCGUCGCGcU-----------UCGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 21871 | 0.67 | 0.311904 |
Target: 5'- uCCUGUcgucgaccGGCuuucgcaucgacGGCGCGguGCGCGCCAc -3' miRNA: 3'- cGGACG--------CCG------------UCGCGCuuCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 15428 | 0.67 | 0.302105 |
Target: 5'- gGCCgGCGGCAGCGaccuGCGCgugacguucugcucGCCGg -3' miRNA: 3'- -CGGaCGCCGUCGCgcuuCGCG--------------UGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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