miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 27011 1.06 0.000321
Target:  5'- gGCCUGCGGCAGCGCGAAGCGCACCAUc -3'
miRNA:   3'- -CGGACGCCGUCGCGCUUCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 8837 0.8 0.035258
Target:  5'- uGCCUGCGGU-GCGUcguaGAAGCGCGCCGc -3'
miRNA:   3'- -CGGACGCCGuCGCG----CUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 33406 0.8 0.037372
Target:  5'- uGCCUGCGGC-GCaGCGAcuGCGCGCCGa -3'
miRNA:   3'- -CGGACGCCGuCG-CGCUu-CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 44455 0.78 0.049949
Target:  5'- cGCCcGgGGguGCGCGAGGCGCucaACCAg -3'
miRNA:   3'- -CGGaCgCCguCGCGCUUCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 15283 0.78 0.052919
Target:  5'- -gCUGCGGCGGCGCGGucAGCaucaGCACCGg -3'
miRNA:   3'- cgGACGCCGUCGCGCU--UCG----CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 41568 0.76 0.070534
Target:  5'- aCCUGCGacuGCGGCGCuGGgcGGCGCGCCGUg -3'
miRNA:   3'- cGGACGC---CGUCGCG-CU--UCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 46938 0.76 0.07468
Target:  5'- aGCCUcGCGcGCAGCcaagGCGgcGCGCGCCGa -3'
miRNA:   3'- -CGGA-CGC-CGUCG----CGCuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 29381 0.75 0.079059
Target:  5'- cCCUGCGGCcGCGCGAuaAGCGCGguUCAg -3'
miRNA:   3'- cGGACGCCGuCGCGCU--UCGCGU--GGUa -5'
17043 5' -60.6 NC_004333.2 + 20427 0.75 0.082738
Target:  5'- cGCCUucgaaaacacguuCGGCGGCGCGAAGCcuGCGCCGg -3'
miRNA:   3'- -CGGAc------------GCCGUCGCGCUUCG--CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 5616 0.74 0.099149
Target:  5'- gGCCgUGCGGCAGCuuGCaGGcaacGCGCACCAUg -3'
miRNA:   3'- -CGG-ACGCCGUCG--CG-CUu---CGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 7407 0.74 0.101976
Target:  5'- uGCCUGCGGCcaggucuGCGCGAuGCGCucgAUCAg -3'
miRNA:   3'- -CGGACGCCGu------CGCGCUuCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 31865 0.73 0.109994
Target:  5'- uGCCUgcaucugcugaaucGCGGCAaGCcauGCGAAGCGUGCCAa -3'
miRNA:   3'- -CGGA--------------CGCCGU-CG---CGCUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 18206 0.73 0.12399
Target:  5'- cGCCgGUGGCAGCGCGGc-CGCGCUc- -3'
miRNA:   3'- -CGGaCGCCGUCGCGCUucGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 15763 0.73 0.127474
Target:  5'- cGUCaGCGaGCuGCGCGAGGCGCggGCCGa -3'
miRNA:   3'- -CGGaCGC-CGuCGCGCUUCGCG--UGGUa -5'
17043 5' -60.6 NC_004333.2 + 17499 0.72 0.133975
Target:  5'- cGCCgGCGGCGGCGCGAacggcuucaugaaGGUGCucgagcagcgcacGCCGc -3'
miRNA:   3'- -CGGaCGCCGUCGCGCU-------------UCGCG-------------UGGUa -5'
17043 5' -60.6 NC_004333.2 + 15718 0.72 0.134345
Target:  5'- -gCUGCGGCucgucgcGGCGCuGAAGgGCGCCGa -3'
miRNA:   3'- cgGACGCCG-------UCGCG-CUUCgCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 42006 0.72 0.142334
Target:  5'- uCCUGuCGGUGcGCGUGAAGCGCgcgGCCAa -3'
miRNA:   3'- cGGAC-GCCGU-CGCGCUUCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 993 0.71 0.157046
Target:  5'- uGCCUcugcugcGCGGCAGCGCGuucuuccggcgucaGAuGCGCAUCGg -3'
miRNA:   3'- -CGGA-------CGCCGUCGCGC--------------UU-CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 6646 0.71 0.16313
Target:  5'- cGCgCU-CGGCAGCGCGcucGGCGCGCUc- -3'
miRNA:   3'- -CG-GAcGCCGUCGCGCu--UCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 39326 0.71 0.167605
Target:  5'- cGCUcgGCGGCGGCGCGcuucuacGaCGCACCGc -3'
miRNA:   3'- -CGGa-CGCCGUCGCGCuu-----C-GCGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.