miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 30621 0.71 0.172189
Target:  5'- cGCCaggucgUGCaGCAGCGCGGcaaGGCGCGgCGUg -3'
miRNA:   3'- -CGG------ACGcCGUCGCGCU---UCGCGUgGUA- -5'
17043 5' -60.6 NC_004333.2 + 3916 0.71 0.175465
Target:  5'- cGCCagGCGGCAGCgGCGGcaGGCcgaccggcagguugGCGCCGUu -3'
miRNA:   3'- -CGGa-CGCCGUCG-CGCU--UCG--------------CGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 9631 0.71 0.176885
Target:  5'- cGgCUGcCGGCGGCGCGccuGCGC-CCGg -3'
miRNA:   3'- -CgGAC-GCCGUCGCGCuu-CGCGuGGUa -5'
17043 5' -60.6 NC_004333.2 + 19288 0.7 0.18024
Target:  5'- gGCCUGCGccgagcgcgaucgcGCGGCacgaGCGcuuGAGCGCGCCGg -3'
miRNA:   3'- -CGGACGC--------------CGUCG----CGC---UUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 25425 0.7 0.181695
Target:  5'- uGCCgGCGGCGGCcgucacGCcGGGCGUGCCGg -3'
miRNA:   3'- -CGGaCGCCGUCG------CGcUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 28781 0.7 0.183651
Target:  5'- gGUC-GCGGCGGCGCGAcuucccaucgcguauAGUGCGuCCAc -3'
miRNA:   3'- -CGGaCGCCGUCGCGCU---------------UCGCGU-GGUa -5'
17043 5' -60.6 NC_004333.2 + 9478 0.7 0.18662
Target:  5'- cGCCgGCGGCuGCGgGAauuucAGCGCggcgGCCAg -3'
miRNA:   3'- -CGGaCGCCGuCGCgCU-----UCGCG----UGGUa -5'
17043 5' -60.6 NC_004333.2 + 6812 0.7 0.191662
Target:  5'- uGCUUGCGGUcgGGCGCGu-GCucgaGCGCCAc -3'
miRNA:   3'- -CGGACGCCG--UCGCGCuuCG----CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 27659 0.7 0.207511
Target:  5'- cGCCaGCGaGCGGCGCGGcGGCG-GCCGg -3'
miRNA:   3'- -CGGaCGC-CGUCGCGCU-UCGCgUGGUa -5'
17043 5' -60.6 NC_004333.2 + 47825 0.7 0.207511
Target:  5'- cGCCUGCGGaCGGCGCuucuuuggagguGAgcauguggcucGGCGCGCUu- -3'
miRNA:   3'- -CGGACGCC-GUCGCG------------CU-----------UCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 38706 0.69 0.21304
Target:  5'- aGCUcgGCGGCGGUGCGGcaccCGCGCCu- -3'
miRNA:   3'- -CGGa-CGCCGUCGCGCUuc--GCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 3989 0.69 0.218125
Target:  5'- -gUUGCGGCGuuuagcugcuGCGUGAccucgaaGGCGCACCAg -3'
miRNA:   3'- cgGACGCCGU----------CGCGCU-------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 41519 0.69 0.218696
Target:  5'- cGCCUGCucgAGCGCGccGAGCGCGCUg- -3'
miRNA:   3'- -CGGACGccgUCGCGC--UUCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 43309 0.69 0.218696
Target:  5'- gGUCaGCGGCGGCaGCGGcaucggcacGGCGCGCgCGUa -3'
miRNA:   3'- -CGGaCGCCGUCG-CGCU---------UCGCGUG-GUA- -5'
17043 5' -60.6 NC_004333.2 + 45486 0.69 0.222151
Target:  5'- gGCCUGuCGGCcgccgccGGCGCGAcgcugcaagcugccGGCGUugCGg -3'
miRNA:   3'- -CGGAC-GCCG-------UCGCGCU--------------UCGCGugGUa -5'
17043 5' -60.6 NC_004333.2 + 22279 0.69 0.223312
Target:  5'- cGCaggGCGGCgaAGCGCGGcgcuuggcgcucGCGCACCAa -3'
miRNA:   3'- -CGga-CGCCG--UCGCGCUu-----------CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 25932 0.69 0.224479
Target:  5'- aGCUauUGCGcGCGGCGCGAugccGGCG-GCCAg -3'
miRNA:   3'- -CGG--ACGC-CGUCGCGCU----UCGCgUGGUa -5'
17043 5' -60.6 NC_004333.2 + 3154 0.69 0.228604
Target:  5'- cGCCaGCGcCAcGCGCGGucgagcggccggacAGCGCGCCGUg -3'
miRNA:   3'- -CGGaCGCcGU-CGCGCU--------------UCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 35775 0.69 0.230392
Target:  5'- gGCCgaaGGCGGCGacacuGGCGCGCCGg -3'
miRNA:   3'- -CGGacgCCGUCGCgcu--UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 39057 0.69 0.230392
Target:  5'- aGCCgGaCGGCGaguacGCGCGAcucGUGCGCCGUg -3'
miRNA:   3'- -CGGaC-GCCGU-----CGCGCUu--CGCGUGGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.