Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17043 | 5' | -60.6 | NC_004333.2 | + | 15170 | 0.66 | 0.335431 |
Target: 5'- aGCgaGCGGCAGUGCGuAGGuCGCGu--- -3' miRNA: 3'- -CGgaCGCCGUCGCGC-UUC-GCGUggua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 4775 | 0.66 | 0.335431 |
Target: 5'- uGCCUGCgcgGGCGGCuGCGGGaccauagcgauuGCGCGuucCCAUg -3' miRNA: 3'- -CGGACG---CCGUCG-CGCUU------------CGCGU---GGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 20894 | 0.66 | 0.335431 |
Target: 5'- aGCCcgGC-GCAGCGCGugcuacuuGGCGCGCa-- -3' miRNA: 3'- -CGGa-CGcCGUCGCGCu-------UCGCGUGgua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 18536 | 0.66 | 0.335431 |
Target: 5'- aGCCgGCGGCaacccgGGUGCGGcagccGGCGCGgCGg -3' miRNA: 3'- -CGGaCGCCG------UCGCGCU-----UCGCGUgGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 37413 | 0.67 | 0.327447 |
Target: 5'- cGCUcGCGGUuuGCGCGgcGUGCACg-- -3' miRNA: 3'- -CGGaCGCCGu-CGCGCuuCGCGUGgua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 34712 | 0.67 | 0.327447 |
Target: 5'- cGCCUGCGcauucGCGaCGCGguGCGCACgAc -3' miRNA: 3'- -CGGACGC-----CGUcGCGCuuCGCGUGgUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 3557 | 0.67 | 0.322725 |
Target: 5'- uGCC-GC-GCAGCGCGucggccgaccacauAGUGCGCCAc -3' miRNA: 3'- -CGGaCGcCGUCGCGCu-------------UCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 25631 | 0.67 | 0.319605 |
Target: 5'- uGCCcuUGCGGCgucgucAGCGCGGucgaaAGCGUcuuGCCGg -3' miRNA: 3'- -CGG--ACGCCG------UCGCGCU-----UCGCG---UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 22176 | 0.67 | 0.319605 |
Target: 5'- cGCCgGCGGCGGCcggcgGCGGuucGGCgGCugCGg -3' miRNA: 3'- -CGGaCGCCGUCG-----CGCU---UCG-CGugGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 8870 | 0.67 | 0.319605 |
Target: 5'- ---cGCGGCugcGGCGCGGuuagccGCGCACCu- -3' miRNA: 3'- cggaCGCCG---UCGCGCUu-----CGCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 12288 | 0.67 | 0.312668 |
Target: 5'- gGCac-CGGCGGCGCGcauugcggcguccuGCGCGCCAg -3' miRNA: 3'- -CGgacGCCGUCGCGCuu------------CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 44414 | 0.67 | 0.311904 |
Target: 5'- gGCCUGCcgggcucgcuGGCuggugcGUGCGAGGCGCucgGCCu- -3' miRNA: 3'- -CGGACG----------CCGu-----CGCGCUUCGCG---UGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 8305 | 0.67 | 0.311904 |
Target: 5'- ---gGCGGC-GCGCGggGCucGCGCCc- -3' miRNA: 3'- cggaCGCCGuCGCGCuuCG--CGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 31228 | 0.67 | 0.311904 |
Target: 5'- uGCCggucgcGaCGGCcGCGCGgcGCaGCGCCGUc -3' miRNA: 3'- -CGGa-----C-GCCGuCGCGCuuCG-CGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 21871 | 0.67 | 0.311904 |
Target: 5'- uCCUGUcgucgaccGGCuuucgcaucgacGGCGCGguGCGCGCCAc -3' miRNA: 3'- cGGACG--------CCG------------UCGCGCuuCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 13955 | 0.67 | 0.304345 |
Target: 5'- cGCCUuggcgacuucagGCGGCGGC-CGguGCGCGCgAg -3' miRNA: 3'- -CGGA------------CGCCGUCGcGCuuCGCGUGgUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 22113 | 0.67 | 0.304345 |
Target: 5'- cGCCgccGCuGCGGCGCcAcuggcaaauccGGCGCACCGUc -3' miRNA: 3'- -CGGa--CGcCGUCGCGcU-----------UCGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 21990 | 0.67 | 0.304345 |
Target: 5'- gGCCguuuucuuUGCGuCGGCGCGAaucAGCGCGCgGg -3' miRNA: 3'- -CGG--------ACGCcGUCGCGCU---UCGCGUGgUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 15428 | 0.67 | 0.302105 |
Target: 5'- gGCCgGCGGCAGCGaccuGCGCgugacguucugcucGCCGg -3' miRNA: 3'- -CGGaCGCCGUCGCgcuuCGCG--------------UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 29966 | 0.67 | 0.296928 |
Target: 5'- uGCCgagcGCGGCcgcgcugccaccGGCGCcGAGCGCgagcACCAUg -3' miRNA: 3'- -CGGa---CGCCG------------UCGCGcUUCGCG----UGGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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