miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 29966 0.67 0.296928
Target:  5'- uGCCgagcGCGGCcgcgcugccaccGGCGCcGAGCGCgagcACCAUg -3'
miRNA:   3'- -CGGa---CGCCG------------UCGCGcUUCGCG----UGGUA- -5'
17043 5' -60.6 NC_004333.2 + 9699 0.67 0.296194
Target:  5'- uGCCgucccauUGCGGCAGCGCaaucaucgcGuCGCGCCAc -3'
miRNA:   3'- -CGG-------ACGCCGUCGCGcuu------C-GCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 39865 0.67 0.289652
Target:  5'- cGCauaGCGG-GGCGCGAGccccGCGCGCCGc -3'
miRNA:   3'- -CGga-CGCCgUCGCGCUU----CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 34416 0.68 0.282516
Target:  5'- cGCCgcGCGaGCGGCGCGcGGCGUcCUAc -3'
miRNA:   3'- -CGGa-CGC-CGUCGCGCuUCGCGuGGUa -5'
17043 5' -60.6 NC_004333.2 + 4722 0.68 0.282516
Target:  5'- -aUUGCGGC-GCGC-AAGCGCGCgAUg -3'
miRNA:   3'- cgGACGCCGuCGCGcUUCGCGUGgUA- -5'
17043 5' -60.6 NC_004333.2 + 11816 0.68 0.275521
Target:  5'- ---cGCGGCcaucAGCGCGAcGGCGCGCUc- -3'
miRNA:   3'- cggaCGCCG----UCGCGCU-UCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 5197 0.68 0.268664
Target:  5'- cGCCUGCa--GGCGCGgcGUcgGCACCGUc -3'
miRNA:   3'- -CGGACGccgUCGCGCuuCG--CGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 42097 0.68 0.267986
Target:  5'- -gCUGCgcgacgaGGCGuGuCGCGAGGUGCGCCAg -3'
miRNA:   3'- cgGACG-------CCGU-C-GCGCUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 36083 0.68 0.261946
Target:  5'- gGCCcGUGacGCGGCGCu--GCGCGCCAg -3'
miRNA:   3'- -CGGaCGC--CGUCGCGcuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 47474 0.68 0.261946
Target:  5'- cGCCgGCGGCGacugccGCGCugaacGAGGCGCcgGCCGg -3'
miRNA:   3'- -CGGaCGCCGU------CGCG-----CUUCGCG--UGGUa -5'
17043 5' -60.6 NC_004333.2 + 38458 0.68 0.261946
Target:  5'- cGCCgacGCGGCGuuuCGCGAAccgcGUGCGCCGa -3'
miRNA:   3'- -CGGa--CGCCGUc--GCGCUU----CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 25868 0.68 0.261946
Target:  5'- aUCUGCaGCAGCGCuuGGUGCGCgAg -3'
miRNA:   3'- cGGACGcCGUCGCGcuUCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 28761 0.68 0.261946
Target:  5'- cGUC-GCgGGUAGCGCGGcguaggcguAGCGCAUCAg -3'
miRNA:   3'- -CGGaCG-CCGUCGCGCU---------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 30135 0.68 0.261946
Target:  5'- aGCa-GCgGGCAGCGCGAucAGCGCguagaacucgGCCGg -3'
miRNA:   3'- -CGgaCG-CCGUCGCGCU--UCGCG----------UGGUa -5'
17043 5' -60.6 NC_004333.2 + 29313 0.68 0.255365
Target:  5'- cGCCccgGCGGCAaUGCGuuGCGCACgGc -3'
miRNA:   3'- -CGGa--CGCCGUcGCGCuuCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 9177 0.68 0.248284
Target:  5'- cGCUUGCguucguucgcgacGGCAGUGuCGAucgcgguGCGCACCGa -3'
miRNA:   3'- -CGGACG-------------CCGUCGC-GCUu------CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 2418 0.69 0.242611
Target:  5'- cGCCguacaGCGGCAGCGUGccuugguacGGCGCGgCGa -3'
miRNA:   3'- -CGGa----CGCCGUCGCGCu--------UCGCGUgGUa -5'
17043 5' -60.6 NC_004333.2 + 29874 0.69 0.236435
Target:  5'- ---cGCGGUAGUcgucgGCGAAGCGCugCGc -3'
miRNA:   3'- cggaCGCCGUCG-----CGCUUCGCGugGUa -5'
17043 5' -60.6 NC_004333.2 + 39057 0.69 0.230392
Target:  5'- aGCCgGaCGGCGaguacGCGCGAcucGUGCGCCGUg -3'
miRNA:   3'- -CGGaC-GCCGU-----CGCGCUu--CGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 35775 0.69 0.230392
Target:  5'- gGCCgaaGGCGGCGacacuGGCGCGCCGg -3'
miRNA:   3'- -CGGacgCCGUCGCgcu--UCGCGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.