miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 9177 0.68 0.248284
Target:  5'- cGCUUGCguucguucgcgacGGCAGUGuCGAucgcgguGCGCACCGa -3'
miRNA:   3'- -CGGACG-------------CCGUCGC-GCUu------CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 9269 0.66 0.335431
Target:  5'- uGCUUGuUGGCcgugccgaucAGCGCGAAGCgGCGCgGg -3'
miRNA:   3'- -CGGAC-GCCG----------UCGCGCUUCG-CGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 9456 0.66 0.360228
Target:  5'- uCCUGCGcaccaGGCGCGGGuGCcGCACCGc -3'
miRNA:   3'- cGGACGCcg---UCGCGCUU-CG-CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 9478 0.7 0.18662
Target:  5'- cGCCgGCGGCuGCGgGAauuucAGCGCggcgGCCAg -3'
miRNA:   3'- -CGGaCGCCGuCGCgCU-----UCGCG----UGGUa -5'
17043 5' -60.6 NC_004333.2 + 9631 0.71 0.176885
Target:  5'- cGgCUGcCGGCGGCGCGccuGCGC-CCGg -3'
miRNA:   3'- -CgGAC-GCCGUCGCGCuu-CGCGuGGUa -5'
17043 5' -60.6 NC_004333.2 + 9699 0.67 0.296194
Target:  5'- uGCCgucccauUGCGGCAGCGCaaucaucgcGuCGCGCCAc -3'
miRNA:   3'- -CGG-------ACGCCGUCGCGcuu------C-GCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 9997 0.66 0.343556
Target:  5'- aGCUUcuCGGCGGCcauuGCGAgcGGCGUGCCAa -3'
miRNA:   3'- -CGGAc-GCCGUCG----CGCU--UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 11816 0.68 0.275521
Target:  5'- ---cGCGGCcaucAGCGCGAcGGCGCGCUc- -3'
miRNA:   3'- cggaCGCCG----UCGCGCU-UCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 11911 0.66 0.351822
Target:  5'- gGCCcggcaUGCGcaGCGGCGC---GCGCGCCAUu -3'
miRNA:   3'- -CGG-----ACGC--CGUCGCGcuuCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 12288 0.67 0.312668
Target:  5'- gGCac-CGGCGGCGCGcauugcggcguccuGCGCGCCAg -3'
miRNA:   3'- -CGgacGCCGUCGCGCuu------------CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 13955 0.67 0.304345
Target:  5'- cGCCUuggcgacuucagGCGGCGGC-CGguGCGCGCgAg -3'
miRNA:   3'- -CGGA------------CGCCGUCGcGCuuCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 14683 0.66 0.386275
Target:  5'- aGCUUGuCGGCcgagugcaGGUGUGGcacgAGUGCGCCAa -3'
miRNA:   3'- -CGGAC-GCCG--------UCGCGCU----UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 14876 0.66 0.386275
Target:  5'- -gCUGCuGCAgGCGCGucAGCaGCACCGa -3'
miRNA:   3'- cgGACGcCGU-CGCGCu-UCG-CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 15170 0.66 0.335431
Target:  5'- aGCgaGCGGCAGUGCGuAGGuCGCGu--- -3'
miRNA:   3'- -CGgaCGCCGUCGCGC-UUC-GCGUggua -5'
17043 5' -60.6 NC_004333.2 + 15283 0.78 0.052919
Target:  5'- -gCUGCGGCGGCGCGGucAGCaucaGCACCGg -3'
miRNA:   3'- cgGACGCCGUCGCGCU--UCG----CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 15428 0.67 0.302105
Target:  5'- gGCCgGCGGCAGCGaccuGCGCgugacguucugcucGCCGg -3'
miRNA:   3'- -CGGaCGCCGUCGCgcuuCGCG--------------UGGUa -5'
17043 5' -60.6 NC_004333.2 + 15718 0.72 0.134345
Target:  5'- -gCUGCGGCucgucgcGGCGCuGAAGgGCGCCGa -3'
miRNA:   3'- cgGACGCCG-------UCGCG-CUUCgCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 15763 0.73 0.127474
Target:  5'- cGUCaGCGaGCuGCGCGAGGCGCggGCCGa -3'
miRNA:   3'- -CGGaCGC-CGuCGCGCUUCGCG--UGGUa -5'
17043 5' -60.6 NC_004333.2 + 17499 0.72 0.133975
Target:  5'- cGCCgGCGGCGGCGCGAacggcuucaugaaGGUGCucgagcagcgcacGCCGc -3'
miRNA:   3'- -CGGaCGCCGUCGCGCU-------------UCGCG-------------UGGUa -5'
17043 5' -60.6 NC_004333.2 + 18206 0.73 0.12399
Target:  5'- cGCCgGUGGCAGCGCGGc-CGCGCUc- -3'
miRNA:   3'- -CGGaCGCCGUCGCGCUucGCGUGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.