miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 18536 0.66 0.335431
Target:  5'- aGCCgGCGGCaacccgGGUGCGGcagccGGCGCGgCGg -3'
miRNA:   3'- -CGGaCGCCG------UCGCGCU-----UCGCGUgGUa -5'
17043 5' -60.6 NC_004333.2 + 19288 0.7 0.18024
Target:  5'- gGCCUGCGccgagcgcgaucgcGCGGCacgaGCGcuuGAGCGCGCCGg -3'
miRNA:   3'- -CGGACGC--------------CGUCG----CGC---UUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 20427 0.75 0.082738
Target:  5'- cGCCUucgaaaacacguuCGGCGGCGCGAAGCcuGCGCCGg -3'
miRNA:   3'- -CGGAc------------GCCGUCGCGCUUCG--CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 20894 0.66 0.335431
Target:  5'- aGCCcgGC-GCAGCGCGugcuacuuGGCGCGCa-- -3'
miRNA:   3'- -CGGa-CGcCGUCGCGCu-------UCGCGUGgua -5'
17043 5' -60.6 NC_004333.2 + 21871 0.67 0.311904
Target:  5'- uCCUGUcgucgaccGGCuuucgcaucgacGGCGCGguGCGCGCCAc -3'
miRNA:   3'- cGGACG--------CCG------------UCGCGCuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 21990 0.67 0.304345
Target:  5'- gGCCguuuucuuUGCGuCGGCGCGAaucAGCGCGCgGg -3'
miRNA:   3'- -CGG--------ACGCcGUCGCGCU---UCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 22113 0.67 0.304345
Target:  5'- cGCCgccGCuGCGGCGCcAcuggcaaauccGGCGCACCGUc -3'
miRNA:   3'- -CGGa--CGcCGUCGCGcU-----------UCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 22176 0.67 0.319605
Target:  5'- cGCCgGCGGCGGCcggcgGCGGuucGGCgGCugCGg -3'
miRNA:   3'- -CGGaCGCCGUCG-----CGCU---UCG-CGugGUa -5'
17043 5' -60.6 NC_004333.2 + 22279 0.69 0.223312
Target:  5'- cGCaggGCGGCgaAGCGCGGcgcuuggcgcucGCGCACCAa -3'
miRNA:   3'- -CGga-CGCCG--UCGCGCUu-----------CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 25425 0.7 0.181695
Target:  5'- uGCCgGCGGCGGCcgucacGCcGGGCGUGCCGg -3'
miRNA:   3'- -CGGaCGCCGUCG------CGcUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 25631 0.67 0.319605
Target:  5'- uGCCcuUGCGGCgucgucAGCGCGGucgaaAGCGUcuuGCCGg -3'
miRNA:   3'- -CGG--ACGCCG------UCGCGCU-----UCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 25868 0.68 0.261946
Target:  5'- aUCUGCaGCAGCGCuuGGUGCGCgAg -3'
miRNA:   3'- cGGACGcCGUCGCGcuUCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 25932 0.69 0.224479
Target:  5'- aGCUauUGCGcGCGGCGCGAugccGGCG-GCCAg -3'
miRNA:   3'- -CGG--ACGC-CGUCGCGCU----UCGCgUGGUa -5'
17043 5' -60.6 NC_004333.2 + 27011 1.06 0.000321
Target:  5'- gGCCUGCGGCAGCGCGAAGCGCACCAUc -3'
miRNA:   3'- -CGGACGCCGUCGCGCUUCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 27434 0.66 0.336237
Target:  5'- aGCCgcgucggcgaugucCGGCAGCGC---GCGCGCCGUc -3'
miRNA:   3'- -CGGac------------GCCGUCGCGcuuCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 27659 0.7 0.207511
Target:  5'- cGCCaGCGaGCGGCGCGGcGGCG-GCCGg -3'
miRNA:   3'- -CGGaCGC-CGUCGCGCU-UCGCgUGGUa -5'
17043 5' -60.6 NC_004333.2 + 28761 0.68 0.261946
Target:  5'- cGUC-GCgGGUAGCGCGGcguaggcguAGCGCAUCAg -3'
miRNA:   3'- -CGGaCG-CCGUCGCGCU---------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 28781 0.7 0.183651
Target:  5'- gGUC-GCGGCGGCGCGAcuucccaucgcguauAGUGCGuCCAc -3'
miRNA:   3'- -CGGaCGCCGUCGCGCU---------------UCGCGU-GGUa -5'
17043 5' -60.6 NC_004333.2 + 29313 0.68 0.255365
Target:  5'- cGCCccgGCGGCAaUGCGuuGCGCACgGc -3'
miRNA:   3'- -CGGa--CGCCGUcGCGCuuCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 29381 0.75 0.079059
Target:  5'- cCCUGCGGCcGCGCGAuaAGCGCGguUCAg -3'
miRNA:   3'- cGGACGCCGuCGCGCU--UCGCGU--GGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.