Results 61 - 80 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17043 | 5' | -60.6 | NC_004333.2 | + | 29874 | 0.69 | 0.236435 |
Target: 5'- ---cGCGGUAGUcgucgGCGAAGCGCugCGc -3' miRNA: 3'- cggaCGCCGUCG-----CGCUUCGCGugGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 29966 | 0.67 | 0.296928 |
Target: 5'- uGCCgagcGCGGCcgcgcugccaccGGCGCcGAGCGCgagcACCAUg -3' miRNA: 3'- -CGGa---CGCCG------------UCGCGcUUCGCG----UGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 30135 | 0.68 | 0.261946 |
Target: 5'- aGCa-GCgGGCAGCGCGAucAGCGCguagaacucgGCCGg -3' miRNA: 3'- -CGgaCG-CCGUCGCGCU--UCGCG----------UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 30621 | 0.71 | 0.172189 |
Target: 5'- cGCCaggucgUGCaGCAGCGCGGcaaGGCGCGgCGUg -3' miRNA: 3'- -CGG------ACGcCGUCGCGCU---UCGCGUgGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 30699 | 0.66 | 0.343556 |
Target: 5'- --gUGCGaGCAGCGUGA-GCGCGgCGg -3' miRNA: 3'- cggACGC-CGUCGCGCUuCGCGUgGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 31152 | 0.66 | 0.368773 |
Target: 5'- gGCCUGCaGCgugcacgagucgAGCGCGGcgacGGCGUauGCCGc -3' miRNA: 3'- -CGGACGcCG------------UCGCGCU----UCGCG--UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 31228 | 0.67 | 0.311904 |
Target: 5'- uGCCggucgcGaCGGCcGCGCGgcGCaGCGCCGUc -3' miRNA: 3'- -CGGa-----C-GCCGuCGCGCuuCG-CGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 31865 | 0.73 | 0.109994 |
Target: 5'- uGCCUgcaucugcugaaucGCGGCAaGCcauGCGAAGCGUGCCAa -3' miRNA: 3'- -CGGA--------------CGCCGU-CG---CGCUUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 32689 | 0.66 | 0.368773 |
Target: 5'- cGCC-GCGaGCAGCccuguuGCGcucggcacgccAAGCGCGCCGa -3' miRNA: 3'- -CGGaCGC-CGUCG------CGC-----------UUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 33406 | 0.8 | 0.037372 |
Target: 5'- uGCCUGCGGC-GCaGCGAcuGCGCGCCGa -3' miRNA: 3'- -CGGACGCCGuCG-CGCUu-CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 34416 | 0.68 | 0.282516 |
Target: 5'- cGCCgcGCGaGCGGCGCGcGGCGUcCUAc -3' miRNA: 3'- -CGGa-CGC-CGUCGCGCuUCGCGuGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 34712 | 0.67 | 0.327447 |
Target: 5'- cGCCUGCGcauucGCGaCGCGguGCGCACgAc -3' miRNA: 3'- -CGGACGC-----CGUcGCGCuuCGCGUGgUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 35775 | 0.69 | 0.230392 |
Target: 5'- gGCCgaaGGCGGCGacacuGGCGCGCCGg -3' miRNA: 3'- -CGGacgCCGUCGCgcu--UCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 36083 | 0.68 | 0.261946 |
Target: 5'- gGCCcGUGacGCGGCGCu--GCGCGCCAg -3' miRNA: 3'- -CGGaCGC--CGUCGCGcuuCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 37413 | 0.67 | 0.327447 |
Target: 5'- cGCUcGCGGUuuGCGCGgcGUGCACg-- -3' miRNA: 3'- -CGGaCGCCGu-CGCGCuuCGCGUGgua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 38458 | 0.68 | 0.261946 |
Target: 5'- cGCCgacGCGGCGuuuCGCGAAccgcGUGCGCCGa -3' miRNA: 3'- -CGGa--CGCCGUc--GCGCUU----CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 38706 | 0.69 | 0.21304 |
Target: 5'- aGCUcgGCGGCGGUGCGGcaccCGCGCCu- -3' miRNA: 3'- -CGGa-CGCCGUCGCGCUuc--GCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 38931 | 0.66 | 0.352656 |
Target: 5'- uGCCgcacGCGGCgaggcgcccccguucGGCGCGAuggaugcgaagucgGuGCGCACCGc -3' miRNA: 3'- -CGGa---CGCCG---------------UCGCGCU--------------U-CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 39057 | 0.69 | 0.230392 |
Target: 5'- aGCCgGaCGGCGaguacGCGCGAcucGUGCGCCGUg -3' miRNA: 3'- -CGGaC-GCCGU-----CGCGCUu--CGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 39150 | 0.66 | 0.360228 |
Target: 5'- cGCCaaaGGCAGCG---AGCGCGCCGc -3' miRNA: 3'- -CGGacgCCGUCGCgcuUCGCGUGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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