miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 47825 0.7 0.207511
Target:  5'- cGCCUGCGGaCGGCGCuucuuuggagguGAgcauguggcucGGCGCGCUu- -3'
miRNA:   3'- -CGGACGCC-GUCGCG------------CU-----------UCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 47474 0.68 0.261946
Target:  5'- cGCCgGCGGCGacugccGCGCugaacGAGGCGCcgGCCGg -3'
miRNA:   3'- -CGGaCGCCGU------CGCG-----CUUCGCG--UGGUa -5'
17043 5' -60.6 NC_004333.2 + 46938 0.76 0.07468
Target:  5'- aGCCUcGCGcGCAGCcaagGCGgcGCGCGCCGa -3'
miRNA:   3'- -CGGA-CGC-CGUCG----CGCuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 46105 0.66 0.360228
Target:  5'- aCCU-UGGCcgAGCGCGguGCGCGCUAc -3'
miRNA:   3'- cGGAcGCCG--UCGCGCuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 45486 0.69 0.222151
Target:  5'- gGCCUGuCGGCcgccgccGGCGCGAcgcugcaagcugccGGCGUugCGg -3'
miRNA:   3'- -CGGAC-GCCG-------UCGCGCU--------------UCGCGugGUa -5'
17043 5' -60.6 NC_004333.2 + 44953 0.66 0.360228
Target:  5'- uGCCcgGCGucauCGGgGCGGgcGGCGCGCCGg -3'
miRNA:   3'- -CGGa-CGCc---GUCgCGCU--UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 44455 0.78 0.049949
Target:  5'- cGCCcGgGGguGCGCGAGGCGCucaACCAg -3'
miRNA:   3'- -CGGaCgCCguCGCGCUUCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 44414 0.67 0.311904
Target:  5'- gGCCUGCcgggcucgcuGGCuggugcGUGCGAGGCGCucgGCCu- -3'
miRNA:   3'- -CGGACG----------CCGu-----CGCGCUUCGCG---UGGua -5'
17043 5' -60.6 NC_004333.2 + 44382 0.67 0.296928
Target:  5'- uGCgCUGCucGGCGGCGCGu-GCGCGgUAc -3'
miRNA:   3'- -CG-GACG--CCGUCGCGCuuCGCGUgGUa -5'
17043 5' -60.6 NC_004333.2 + 44004 0.66 0.368773
Target:  5'- cGCC-GCuGCAGCacgaGCGcGGCGCGCUGUa -3'
miRNA:   3'- -CGGaCGcCGUCG----CGCuUCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 43309 0.69 0.218696
Target:  5'- gGUCaGCGGCGGCaGCGGcaucggcacGGCGCGCgCGUa -3'
miRNA:   3'- -CGGaCGCCGUCG-CGCU---------UCGCGUG-GUA- -5'
17043 5' -60.6 NC_004333.2 + 42097 0.68 0.267986
Target:  5'- -gCUGCgcgacgaGGCGuGuCGCGAGGUGCGCCAg -3'
miRNA:   3'- cgGACG-------CCGU-C-GCGCUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 42006 0.72 0.142334
Target:  5'- uCCUGuCGGUGcGCGUGAAGCGCgcgGCCAa -3'
miRNA:   3'- cGGAC-GCCGU-CGCGCUUCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 41568 0.76 0.070534
Target:  5'- aCCUGCGacuGCGGCGCuGGgcGGCGCGCCGUg -3'
miRNA:   3'- cGGACGC---CGUCGCG-CU--UCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 41519 0.69 0.218696
Target:  5'- cGCCUGCucgAGCGCGccGAGCGCGCUg- -3'
miRNA:   3'- -CGGACGccgUCGCGC--UUCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 40726 0.66 0.363629
Target:  5'- aCCgGCGGCGGCaagucgcuccugaacGCGAugcugaucgAGCGCAUCGc -3'
miRNA:   3'- cGGaCGCCGUCG---------------CGCU---------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 39865 0.67 0.289652
Target:  5'- cGCauaGCGG-GGCGCGAGccccGCGCGCCGc -3'
miRNA:   3'- -CGga-CGCCgUCGCGCUU----CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 39326 0.71 0.167605
Target:  5'- cGCUcgGCGGCGGCGCGcuucuacGaCGCACCGc -3'
miRNA:   3'- -CGGa-CGCCGUCGCGCuu-----C-GCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 39150 0.66 0.360228
Target:  5'- cGCCaaaGGCAGCG---AGCGCGCCGc -3'
miRNA:   3'- -CGGacgCCGUCGCgcuUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 39057 0.69 0.230392
Target:  5'- aGCCgGaCGGCGaguacGCGCGAcucGUGCGCCGUg -3'
miRNA:   3'- -CGGaC-GCCGU-----CGCGCUu--CGCGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.