miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 38931 0.66 0.352656
Target:  5'- uGCCgcacGCGGCgaggcgcccccguucGGCGCGAuggaugcgaagucgGuGCGCACCGc -3'
miRNA:   3'- -CGGa---CGCCG---------------UCGCGCU--------------U-CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 38706 0.69 0.21304
Target:  5'- aGCUcgGCGGCGGUGCGGcaccCGCGCCu- -3'
miRNA:   3'- -CGGa-CGCCGUCGCGCUuc--GCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 38458 0.68 0.261946
Target:  5'- cGCCgacGCGGCGuuuCGCGAAccgcGUGCGCCGa -3'
miRNA:   3'- -CGGa--CGCCGUc--GCGCUU----CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 37413 0.67 0.327447
Target:  5'- cGCUcGCGGUuuGCGCGgcGUGCACg-- -3'
miRNA:   3'- -CGGaCGCCGu-CGCGCuuCGCGUGgua -5'
17043 5' -60.6 NC_004333.2 + 36083 0.68 0.261946
Target:  5'- gGCCcGUGacGCGGCGCu--GCGCGCCAg -3'
miRNA:   3'- -CGGaCGC--CGUCGCGcuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 35775 0.69 0.230392
Target:  5'- gGCCgaaGGCGGCGacacuGGCGCGCCGg -3'
miRNA:   3'- -CGGacgCCGUCGCgcu--UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 34712 0.67 0.327447
Target:  5'- cGCCUGCGcauucGCGaCGCGguGCGCACgAc -3'
miRNA:   3'- -CGGACGC-----CGUcGCGCuuCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 34416 0.68 0.282516
Target:  5'- cGCCgcGCGaGCGGCGCGcGGCGUcCUAc -3'
miRNA:   3'- -CGGa-CGC-CGUCGCGCuUCGCGuGGUa -5'
17043 5' -60.6 NC_004333.2 + 33406 0.8 0.037372
Target:  5'- uGCCUGCGGC-GCaGCGAcuGCGCGCCGa -3'
miRNA:   3'- -CGGACGCCGuCG-CGCUu-CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 32689 0.66 0.368773
Target:  5'- cGCC-GCGaGCAGCccuguuGCGcucggcacgccAAGCGCGCCGa -3'
miRNA:   3'- -CGGaCGC-CGUCG------CGC-----------UUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 31865 0.73 0.109994
Target:  5'- uGCCUgcaucugcugaaucGCGGCAaGCcauGCGAAGCGUGCCAa -3'
miRNA:   3'- -CGGA--------------CGCCGU-CG---CGCUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 31228 0.67 0.311904
Target:  5'- uGCCggucgcGaCGGCcGCGCGgcGCaGCGCCGUc -3'
miRNA:   3'- -CGGa-----C-GCCGuCGCGCuuCG-CGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 31152 0.66 0.368773
Target:  5'- gGCCUGCaGCgugcacgagucgAGCGCGGcgacGGCGUauGCCGc -3'
miRNA:   3'- -CGGACGcCG------------UCGCGCU----UCGCG--UGGUa -5'
17043 5' -60.6 NC_004333.2 + 30699 0.66 0.343556
Target:  5'- --gUGCGaGCAGCGUGA-GCGCGgCGg -3'
miRNA:   3'- cggACGC-CGUCGCGCUuCGCGUgGUa -5'
17043 5' -60.6 NC_004333.2 + 30621 0.71 0.172189
Target:  5'- cGCCaggucgUGCaGCAGCGCGGcaaGGCGCGgCGUg -3'
miRNA:   3'- -CGG------ACGcCGUCGCGCU---UCGCGUgGUA- -5'
17043 5' -60.6 NC_004333.2 + 30135 0.68 0.261946
Target:  5'- aGCa-GCgGGCAGCGCGAucAGCGCguagaacucgGCCGg -3'
miRNA:   3'- -CGgaCG-CCGUCGCGCU--UCGCG----------UGGUa -5'
17043 5' -60.6 NC_004333.2 + 29966 0.67 0.296928
Target:  5'- uGCCgagcGCGGCcgcgcugccaccGGCGCcGAGCGCgagcACCAUg -3'
miRNA:   3'- -CGGa---CGCCG------------UCGCGcUUCGCG----UGGUA- -5'
17043 5' -60.6 NC_004333.2 + 29874 0.69 0.236435
Target:  5'- ---cGCGGUAGUcgucgGCGAAGCGCugCGc -3'
miRNA:   3'- cggaCGCCGUCG-----CGCUUCGCGugGUa -5'
17043 5' -60.6 NC_004333.2 + 29381 0.75 0.079059
Target:  5'- cCCUGCGGCcGCGCGAuaAGCGCGguUCAg -3'
miRNA:   3'- cGGACGCCGuCGCGCU--UCGCGU--GGUa -5'
17043 5' -60.6 NC_004333.2 + 29313 0.68 0.255365
Target:  5'- cGCCccgGCGGCAaUGCGuuGCGCACgGc -3'
miRNA:   3'- -CGGa--CGCCGUcGCGCuuCGCGUGgUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.