Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17043 | 5' | -60.6 | NC_004333.2 | + | 28781 | 0.7 | 0.183651 |
Target: 5'- gGUC-GCGGCGGCGCGAcuucccaucgcguauAGUGCGuCCAc -3' miRNA: 3'- -CGGaCGCCGUCGCGCU---------------UCGCGU-GGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 28761 | 0.68 | 0.261946 |
Target: 5'- cGUC-GCgGGUAGCGCGGcguaggcguAGCGCAUCAg -3' miRNA: 3'- -CGGaCG-CCGUCGCGCU---------UCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 27659 | 0.7 | 0.207511 |
Target: 5'- cGCCaGCGaGCGGCGCGGcGGCG-GCCGg -3' miRNA: 3'- -CGGaCGC-CGUCGCGCU-UCGCgUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 27434 | 0.66 | 0.336237 |
Target: 5'- aGCCgcgucggcgaugucCGGCAGCGC---GCGCGCCGUc -3' miRNA: 3'- -CGGac------------GCCGUCGCGcuuCGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 27011 | 1.06 | 0.000321 |
Target: 5'- gGCCUGCGGCAGCGCGAAGCGCACCAUc -3' miRNA: 3'- -CGGACGCCGUCGCGCUUCGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 25932 | 0.69 | 0.224479 |
Target: 5'- aGCUauUGCGcGCGGCGCGAugccGGCG-GCCAg -3' miRNA: 3'- -CGG--ACGC-CGUCGCGCU----UCGCgUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 25868 | 0.68 | 0.261946 |
Target: 5'- aUCUGCaGCAGCGCuuGGUGCGCgAg -3' miRNA: 3'- cGGACGcCGUCGCGcuUCGCGUGgUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 25631 | 0.67 | 0.319605 |
Target: 5'- uGCCcuUGCGGCgucgucAGCGCGGucgaaAGCGUcuuGCCGg -3' miRNA: 3'- -CGG--ACGCCG------UCGCGCU-----UCGCG---UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 25425 | 0.7 | 0.181695 |
Target: 5'- uGCCgGCGGCGGCcgucacGCcGGGCGUGCCGg -3' miRNA: 3'- -CGGaCGCCGUCG------CGcUUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 22279 | 0.69 | 0.223312 |
Target: 5'- cGCaggGCGGCgaAGCGCGGcgcuuggcgcucGCGCACCAa -3' miRNA: 3'- -CGga-CGCCG--UCGCGCUu-----------CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 22176 | 0.67 | 0.319605 |
Target: 5'- cGCCgGCGGCGGCcggcgGCGGuucGGCgGCugCGg -3' miRNA: 3'- -CGGaCGCCGUCG-----CGCU---UCG-CGugGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 22113 | 0.67 | 0.304345 |
Target: 5'- cGCCgccGCuGCGGCGCcAcuggcaaauccGGCGCACCGUc -3' miRNA: 3'- -CGGa--CGcCGUCGCGcU-----------UCGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 21990 | 0.67 | 0.304345 |
Target: 5'- gGCCguuuucuuUGCGuCGGCGCGAaucAGCGCGCgGg -3' miRNA: 3'- -CGG--------ACGCcGUCGCGCU---UCGCGUGgUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 21871 | 0.67 | 0.311904 |
Target: 5'- uCCUGUcgucgaccGGCuuucgcaucgacGGCGCGguGCGCGCCAc -3' miRNA: 3'- cGGACG--------CCG------------UCGCGCuuCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 20894 | 0.66 | 0.335431 |
Target: 5'- aGCCcgGC-GCAGCGCGugcuacuuGGCGCGCa-- -3' miRNA: 3'- -CGGa-CGcCGUCGCGCu-------UCGCGUGgua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 20427 | 0.75 | 0.082738 |
Target: 5'- cGCCUucgaaaacacguuCGGCGGCGCGAAGCcuGCGCCGg -3' miRNA: 3'- -CGGAc------------GCCGUCGCGCUUCG--CGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 19288 | 0.7 | 0.18024 |
Target: 5'- gGCCUGCGccgagcgcgaucgcGCGGCacgaGCGcuuGAGCGCGCCGg -3' miRNA: 3'- -CGGACGC--------------CGUCG----CGC---UUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 18536 | 0.66 | 0.335431 |
Target: 5'- aGCCgGCGGCaacccgGGUGCGGcagccGGCGCGgCGg -3' miRNA: 3'- -CGGaCGCCG------UCGCGCU-----UCGCGUgGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 18206 | 0.73 | 0.12399 |
Target: 5'- cGCCgGUGGCAGCGCGGc-CGCGCUc- -3' miRNA: 3'- -CGGaCGCCGUCGCGCUucGCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 17499 | 0.72 | 0.133975 |
Target: 5'- cGCCgGCGGCGGCGCGAacggcuucaugaaGGUGCucgagcagcgcacGCCGc -3' miRNA: 3'- -CGGaCGCCGUCGCGCU-------------UCGCG-------------UGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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