miRNA display CGI


Results 81 - 98 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 8837 0.8 0.035258
Target:  5'- uGCCUGCGGU-GCGUcguaGAAGCGCGCCGc -3'
miRNA:   3'- -CGGACGCCGuCGCG----CUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 8305 0.67 0.311904
Target:  5'- ---gGCGGC-GCGCGggGCucGCGCCc- -3'
miRNA:   3'- cggaCGCCGuCGCGCuuCG--CGUGGua -5'
17043 5' -60.6 NC_004333.2 + 7407 0.74 0.101976
Target:  5'- uGCCUGCGGCcaggucuGCGCGAuGCGCucgAUCAg -3'
miRNA:   3'- -CGGACGCCGu------CGCGCUuCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 6812 0.7 0.191662
Target:  5'- uGCUUGCGGUcgGGCGCGu-GCucgaGCGCCAc -3'
miRNA:   3'- -CGGACGCCG--UCGCGCuuCG----CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 6771 0.66 0.386275
Target:  5'- cGCCUcgaGGUAGC-CGAucgcauacgacAGCGCGCCGa -3'
miRNA:   3'- -CGGAcg-CCGUCGcGCU-----------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 6646 0.71 0.16313
Target:  5'- cGCgCU-CGGCAGCGCGcucGGCGCGCUc- -3'
miRNA:   3'- -CG-GAcGCCGUCGCGCu--UCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 5616 0.74 0.099149
Target:  5'- gGCCgUGCGGCAGCuuGCaGGcaacGCGCACCAUg -3'
miRNA:   3'- -CGG-ACGCCGUCG--CG-CUu---CGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 5197 0.68 0.268664
Target:  5'- cGCCUGCa--GGCGCGgcGUcgGCACCGUc -3'
miRNA:   3'- -CGGACGccgUCGCGCuuCG--CGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 4775 0.66 0.335431
Target:  5'- uGCCUGCgcgGGCGGCuGCGGGaccauagcgauuGCGCGuucCCAUg -3'
miRNA:   3'- -CGGACG---CCGUCG-CGCUU------------CGCGU---GGUA- -5'
17043 5' -60.6 NC_004333.2 + 4722 0.68 0.282516
Target:  5'- -aUUGCGGC-GCGC-AAGCGCGCgAUg -3'
miRNA:   3'- cgGACGCCGuCGCGcUUCGCGUGgUA- -5'
17043 5' -60.6 NC_004333.2 + 3989 0.69 0.218125
Target:  5'- -gUUGCGGCGuuuagcugcuGCGUGAccucgaaGGCGCACCAg -3'
miRNA:   3'- cgGACGCCGU----------CGCGCU-------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 3916 0.71 0.175465
Target:  5'- cGCCagGCGGCAGCgGCGGcaGGCcgaccggcagguugGCGCCGUu -3'
miRNA:   3'- -CGGa-CGCCGUCG-CGCU--UCG--------------CGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 3557 0.67 0.322725
Target:  5'- uGCC-GC-GCAGCGCGucggccgaccacauAGUGCGCCAc -3'
miRNA:   3'- -CGGaCGcCGUCGCGCu-------------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 3154 0.69 0.228604
Target:  5'- cGCCaGCGcCAcGCGCGGucgagcggccggacAGCGCGCCGUg -3'
miRNA:   3'- -CGGaCGCcGU-CGCGCU--------------UCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 2954 0.66 0.377456
Target:  5'- cCCUGCaGCuGCGCGAGcGUGaCGCCc- -3'
miRNA:   3'- cGGACGcCGuCGCGCUU-CGC-GUGGua -5'
17043 5' -60.6 NC_004333.2 + 2418 0.69 0.242611
Target:  5'- cGCCguacaGCGGCAGCGUGccuugguacGGCGCGgCGa -3'
miRNA:   3'- -CGGa----CGCCGUCGCGCu--------UCGCGUgGUa -5'
17043 5' -60.6 NC_004333.2 + 993 0.71 0.157046
Target:  5'- uGCCUcugcugcGCGGCAGCGCGuucuuccggcgucaGAuGCGCAUCGg -3'
miRNA:   3'- -CGGA-------CGCCGUCGCGC--------------UU-CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 433 0.66 0.341104
Target:  5'- gGCUgcGCGGCAGUGCGGaacgcaaucuucacGGCGUuuguGCCGc -3'
miRNA:   3'- -CGGa-CGCCGUCGCGCU--------------UCGCG----UGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.