miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 36083 0.68 0.261946
Target:  5'- gGCCcGUGacGCGGCGCu--GCGCGCCAg -3'
miRNA:   3'- -CGGaCGC--CGUCGCGcuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 2418 0.69 0.242611
Target:  5'- cGCCguacaGCGGCAGCGUGccuugguacGGCGCGgCGa -3'
miRNA:   3'- -CGGa----CGCCGUCGCGCu--------UCGCGUgGUa -5'
17043 5' -60.6 NC_004333.2 + 3916 0.71 0.175465
Target:  5'- cGCCagGCGGCAGCgGCGGcaGGCcgaccggcagguugGCGCCGUu -3'
miRNA:   3'- -CGGa-CGCCGUCG-CGCU--UCG--------------CGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 20427 0.75 0.082738
Target:  5'- cGCCUucgaaaacacguuCGGCGGCGCGAAGCcuGCGCCGg -3'
miRNA:   3'- -CGGAc------------GCCGUCGCGCUUCG--CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 12288 0.67 0.312668
Target:  5'- gGCac-CGGCGGCGCGcauugcggcguccuGCGCGCCAg -3'
miRNA:   3'- -CGgacGCCGUCGCGCuu------------CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 29966 0.67 0.296928
Target:  5'- uGCCgagcGCGGCcgcgcugccaccGGCGCcGAGCGCgagcACCAUg -3'
miRNA:   3'- -CGGa---CGCCG------------UCGCGcUUCGCG----UGGUA- -5'
17043 5' -60.6 NC_004333.2 + 39057 0.69 0.230392
Target:  5'- aGCCgGaCGGCGaguacGCGCGAcucGUGCGCCGUg -3'
miRNA:   3'- -CGGaC-GCCGU-----CGCGCUu--CGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 46938 0.76 0.07468
Target:  5'- aGCCUcGCGcGCAGCcaagGCGgcGCGCGCCGa -3'
miRNA:   3'- -CGGA-CGC-CGUCG----CGCuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 11816 0.68 0.275521
Target:  5'- ---cGCGGCcaucAGCGCGAcGGCGCGCUc- -3'
miRNA:   3'- cggaCGCCG----UCGCGCU-UCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 15283 0.78 0.052919
Target:  5'- -gCUGCGGCGGCGCGGucAGCaucaGCACCGg -3'
miRNA:   3'- cgGACGCCGUCGCGCU--UCG----CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 29874 0.69 0.236435
Target:  5'- ---cGCGGUAGUcgucgGCGAAGCGCugCGc -3'
miRNA:   3'- cggaCGCCGUCG-----CGCUUCGCGugGUa -5'
17043 5' -60.6 NC_004333.2 + 47474 0.68 0.261946
Target:  5'- cGCCgGCGGCGacugccGCGCugaacGAGGCGCcgGCCGg -3'
miRNA:   3'- -CGGaCGCCGU------CGCG-----CUUCGCG--UGGUa -5'
17043 5' -60.6 NC_004333.2 + 47825 0.7 0.207511
Target:  5'- cGCCUGCGGaCGGCGCuucuuuggagguGAgcauguggcucGGCGCGCUu- -3'
miRNA:   3'- -CGGACGCC-GUCGCG------------CU-----------UCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 9631 0.71 0.176885
Target:  5'- cGgCUGcCGGCGGCGCGccuGCGC-CCGg -3'
miRNA:   3'- -CgGAC-GCCGUCGCGCuu-CGCGuGGUa -5'
17043 5' -60.6 NC_004333.2 + 6646 0.71 0.16313
Target:  5'- cGCgCU-CGGCAGCGCGcucGGCGCGCUc- -3'
miRNA:   3'- -CG-GAcGCCGUCGCGCu--UCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 5616 0.74 0.099149
Target:  5'- gGCCgUGCGGCAGCuuGCaGGcaacGCGCACCAUg -3'
miRNA:   3'- -CGG-ACGCCGUCG--CG-CUu---CGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 3557 0.67 0.322725
Target:  5'- uGCC-GC-GCAGCGCGucggccgaccacauAGUGCGCCAc -3'
miRNA:   3'- -CGGaCGcCGUCGCGCu-------------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 25631 0.67 0.319605
Target:  5'- uGCCcuUGCGGCgucgucAGCGCGGucgaaAGCGUcuuGCCGg -3'
miRNA:   3'- -CGG--ACGCCG------UCGCGCU-----UCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 8305 0.67 0.311904
Target:  5'- ---gGCGGC-GCGCGggGCucGCGCCc- -3'
miRNA:   3'- cggaCGCCGuCGCGCuuCG--CGUGGua -5'
17043 5' -60.6 NC_004333.2 + 44382 0.67 0.296928
Target:  5'- uGCgCUGCucGGCGGCGCGu-GCGCGgUAc -3'
miRNA:   3'- -CG-GACG--CCGUCGCGCuuCGCGUgGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.