miRNA display CGI


Results 61 - 80 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 21871 0.67 0.311904
Target:  5'- uCCUGUcgucgaccGGCuuucgcaucgacGGCGCGguGCGCGCCAc -3'
miRNA:   3'- cGGACG--------CCG------------UCGCGCuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 34712 0.67 0.327447
Target:  5'- cGCCUGCGcauucGCGaCGCGguGCGCACgAc -3'
miRNA:   3'- -CGGACGC-----CGUcGCGCuuCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 9269 0.66 0.335431
Target:  5'- uGCUUGuUGGCcgugccgaucAGCGCGAAGCgGCGCgGg -3'
miRNA:   3'- -CGGAC-GCCG----------UCGCGCUUCG-CGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 9997 0.66 0.343556
Target:  5'- aGCUUcuCGGCGGCcauuGCGAgcGGCGUGCCAa -3'
miRNA:   3'- -CGGAc-GCCGUCG----CGCU--UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 38931 0.66 0.352656
Target:  5'- uGCCgcacGCGGCgaggcgcccccguucGGCGCGAuggaugcgaagucgGuGCGCACCGc -3'
miRNA:   3'- -CGGa---CGCCG---------------UCGCGCU--------------U-CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 39150 0.66 0.360228
Target:  5'- cGCCaaaGGCAGCG---AGCGCGCCGc -3'
miRNA:   3'- -CGGacgCCGUCGCgcuUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 29313 0.68 0.255365
Target:  5'- cGCCccgGCGGCAaUGCGuuGCGCACgGc -3'
miRNA:   3'- -CGGa--CGCCGUcGCGCuuCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 35775 0.69 0.230392
Target:  5'- gGCCgaaGGCGGCGacacuGGCGCGCCGg -3'
miRNA:   3'- -CGGacgCCGUCGCgcu--UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 3154 0.69 0.228604
Target:  5'- cGCCaGCGcCAcGCGCGGucgagcggccggacAGCGCGCCGUg -3'
miRNA:   3'- -CGGaCGCcGU-CGCGCU--------------UCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 27011 1.06 0.000321
Target:  5'- gGCCUGCGGCAGCGCGAAGCGCACCAUc -3'
miRNA:   3'- -CGGACGCCGUCGCGCUUCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 8837 0.8 0.035258
Target:  5'- uGCCUGCGGU-GCGUcguaGAAGCGCGCCGc -3'
miRNA:   3'- -CGGACGCCGuCGCG----CUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 44455 0.78 0.049949
Target:  5'- cGCCcGgGGguGCGCGAGGCGCucaACCAg -3'
miRNA:   3'- -CGGaCgCCguCGCGCUUCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 41568 0.76 0.070534
Target:  5'- aCCUGCGacuGCGGCGCuGGgcGGCGCGCCGUg -3'
miRNA:   3'- cGGACGC---CGUCGCG-CU--UCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 29381 0.75 0.079059
Target:  5'- cCCUGCGGCcGCGCGAuaAGCGCGguUCAg -3'
miRNA:   3'- cGGACGCCGuCGCGCU--UCGCGU--GGUa -5'
17043 5' -60.6 NC_004333.2 + 7407 0.74 0.101976
Target:  5'- uGCCUGCGGCcaggucuGCGCGAuGCGCucgAUCAg -3'
miRNA:   3'- -CGGACGCCGu------CGCGCUuCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 38706 0.69 0.21304
Target:  5'- aGCUcgGCGGCGGUGCGGcaccCGCGCCu- -3'
miRNA:   3'- -CGGa-CGCCGUCGCGCUuc--GCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 41519 0.69 0.218696
Target:  5'- cGCCUGCucgAGCGCGccGAGCGCGCUg- -3'
miRNA:   3'- -CGGACGccgUCGCGC--UUCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 43309 0.69 0.218696
Target:  5'- gGUCaGCGGCGGCaGCGGcaucggcacGGCGCGCgCGUa -3'
miRNA:   3'- -CGGaCGCCGUCG-CGCU---------UCGCGUG-GUA- -5'
17043 5' -60.6 NC_004333.2 + 45486 0.69 0.222151
Target:  5'- gGCCUGuCGGCcgccgccGGCGCGAcgcugcaagcugccGGCGUugCGg -3'
miRNA:   3'- -CGGAC-GCCG-------UCGCGCU--------------UCGCGugGUa -5'
17043 5' -60.6 NC_004333.2 + 22279 0.69 0.223312
Target:  5'- cGCaggGCGGCgaAGCGCGGcgcuuggcgcucGCGCACCAa -3'
miRNA:   3'- -CGga-CGCCG--UCGCGCUu-----------CGCGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.