miRNA display CGI


Results 81 - 98 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 7407 0.74 0.101976
Target:  5'- uGCCUGCGGCcaggucuGCGCGAuGCGCucgAUCAg -3'
miRNA:   3'- -CGGACGCCGu------CGCGCUuCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 29381 0.75 0.079059
Target:  5'- cCCUGCGGCcGCGCGAuaAGCGCGguUCAg -3'
miRNA:   3'- cGGACGCCGuCGCGCU--UCGCGU--GGUa -5'
17043 5' -60.6 NC_004333.2 + 41568 0.76 0.070534
Target:  5'- aCCUGCGacuGCGGCGCuGGgcGGCGCGCCGUg -3'
miRNA:   3'- cGGACGC---CGUCGCG-CU--UCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 44455 0.78 0.049949
Target:  5'- cGCCcGgGGguGCGCGAGGCGCucaACCAg -3'
miRNA:   3'- -CGGaCgCCguCGCGCUUCGCG---UGGUa -5'
17043 5' -60.6 NC_004333.2 + 8837 0.8 0.035258
Target:  5'- uGCCUGCGGU-GCGUcguaGAAGCGCGCCGc -3'
miRNA:   3'- -CGGACGCCGuCGCG----CUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 993 0.71 0.157046
Target:  5'- uGCCUcugcugcGCGGCAGCGCGuucuuccggcgucaGAuGCGCAUCGg -3'
miRNA:   3'- -CGGA-------CGCCGUCGCGC--------------UU-CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 19288 0.7 0.18024
Target:  5'- gGCCUGCGccgagcgcgaucgcGCGGCacgaGCGcuuGAGCGCGCCGg -3'
miRNA:   3'- -CGGACGC--------------CGUCG----CGC---UUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 9478 0.7 0.18662
Target:  5'- cGCCgGCGGCuGCGgGAauuucAGCGCggcgGCCAg -3'
miRNA:   3'- -CGGaCGCCGuCGCgCU-----UCGCG----UGGUa -5'
17043 5' -60.6 NC_004333.2 + 35775 0.69 0.230392
Target:  5'- gGCCgaaGGCGGCGacacuGGCGCGCCGg -3'
miRNA:   3'- -CGGacgCCGUCGCgcu--UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 3154 0.69 0.228604
Target:  5'- cGCCaGCGcCAcGCGCGGucgagcggccggacAGCGCGCCGUg -3'
miRNA:   3'- -CGGaCGCcGU-CGCGCU--------------UCGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 22279 0.69 0.223312
Target:  5'- cGCaggGCGGCgaAGCGCGGcgcuuggcgcucGCGCACCAa -3'
miRNA:   3'- -CGga-CGCCG--UCGCGCUu-----------CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 45486 0.69 0.222151
Target:  5'- gGCCUGuCGGCcgccgccGGCGCGAcgcugcaagcugccGGCGUugCGg -3'
miRNA:   3'- -CGGAC-GCCG-------UCGCGCU--------------UCGCGugGUa -5'
17043 5' -60.6 NC_004333.2 + 43309 0.69 0.218696
Target:  5'- gGUCaGCGGCGGCaGCGGcaucggcacGGCGCGCgCGUa -3'
miRNA:   3'- -CGGaCGCCGUCG-CGCU---------UCGCGUG-GUA- -5'
17043 5' -60.6 NC_004333.2 + 41519 0.69 0.218696
Target:  5'- cGCCUGCucgAGCGCGccGAGCGCGCUg- -3'
miRNA:   3'- -CGGACGccgUCGCGC--UUCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 38706 0.69 0.21304
Target:  5'- aGCUcgGCGGCGGUGCGGcaccCGCGCCu- -3'
miRNA:   3'- -CGGa-CGCCGUCGCGCUuc--GCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 27659 0.7 0.207511
Target:  5'- cGCCaGCGaGCGGCGCGGcGGCG-GCCGg -3'
miRNA:   3'- -CGGaCGC-CGUCGCGCU-UCGCgUGGUa -5'
17043 5' -60.6 NC_004333.2 + 6812 0.7 0.191662
Target:  5'- uGCUUGCGGUcgGGCGCGu-GCucgaGCGCCAc -3'
miRNA:   3'- -CGGACGCCG--UCGCGCuuCG----CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 27011 1.06 0.000321
Target:  5'- gGCCUGCGGCAGCGCGAAGCGCACCAUc -3'
miRNA:   3'- -CGGACGCCGUCGCGCUUCGCGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.