Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17043 | 5' | -60.6 | NC_004333.2 | + | 39865 | 0.67 | 0.289652 |
Target: 5'- cGCauaGCGG-GGCGCGAGccccGCGCGCCGc -3' miRNA: 3'- -CGga-CGCCgUCGCGCUU----CGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 9699 | 0.67 | 0.296194 |
Target: 5'- uGCCgucccauUGCGGCAGCGCaaucaucgcGuCGCGCCAc -3' miRNA: 3'- -CGG-------ACGCCGUCGCGcuu------C-GCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 15428 | 0.67 | 0.302105 |
Target: 5'- gGCCgGCGGCAGCGaccuGCGCgugacguucugcucGCCGg -3' miRNA: 3'- -CGGaCGCCGUCGCgcuuCGCG--------------UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 22113 | 0.67 | 0.304345 |
Target: 5'- cGCCgccGCuGCGGCGCcAcuggcaaauccGGCGCACCGUc -3' miRNA: 3'- -CGGa--CGcCGUCGCGcU-----------UCGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 21871 | 0.67 | 0.311904 |
Target: 5'- uCCUGUcgucgaccGGCuuucgcaucgacGGCGCGguGCGCGCCAc -3' miRNA: 3'- cGGACG--------CCG------------UCGCGCuuCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 30621 | 0.71 | 0.172189 |
Target: 5'- cGCCaggucgUGCaGCAGCGCGGcaaGGCGCGgCGUg -3' miRNA: 3'- -CGG------ACGcCGUCGCGCU---UCGCGUgGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 3916 | 0.71 | 0.175465 |
Target: 5'- cGCCagGCGGCAGCgGCGGcaGGCcgaccggcagguugGCGCCGUu -3' miRNA: 3'- -CGGa-CGCCGUCG-CGCU--UCG--------------CGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 9631 | 0.71 | 0.176885 |
Target: 5'- cGgCUGcCGGCGGCGCGccuGCGC-CCGg -3' miRNA: 3'- -CgGAC-GCCGUCGCGCuu-CGCGuGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 25425 | 0.7 | 0.181695 |
Target: 5'- uGCCgGCGGCGGCcgucacGCcGGGCGUGCCGg -3' miRNA: 3'- -CGGaCGCCGUCG------CGcUUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 28781 | 0.7 | 0.183651 |
Target: 5'- gGUC-GCGGCGGCGCGAcuucccaucgcguauAGUGCGuCCAc -3' miRNA: 3'- -CGGaCGCCGUCGCGCU---------------UCGCGU-GGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 47825 | 0.7 | 0.207511 |
Target: 5'- cGCCUGCGGaCGGCGCuucuuuggagguGAgcauguggcucGGCGCGCUu- -3' miRNA: 3'- -CGGACGCC-GUCGCG------------CU-----------UCGCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 39326 | 0.71 | 0.167605 |
Target: 5'- cGCUcgGCGGCGGCGCGcuucuacGaCGCACCGc -3' miRNA: 3'- -CGGa-CGCCGUCGCGCuu-----C-GCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 6646 | 0.71 | 0.16313 |
Target: 5'- cGCgCU-CGGCAGCGCGcucGGCGCGCUc- -3' miRNA: 3'- -CG-GAcGCCGUCGCGCu--UCGCGUGGua -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 42006 | 0.72 | 0.142334 |
Target: 5'- uCCUGuCGGUGcGCGUGAAGCGCgcgGCCAa -3' miRNA: 3'- cGGAC-GCCGU-CGCGCUUCGCG---UGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 31865 | 0.73 | 0.109994 |
Target: 5'- uGCCUgcaucugcugaaucGCGGCAaGCcauGCGAAGCGUGCCAa -3' miRNA: 3'- -CGGA--------------CGCCGU-CG---CGCUUCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 5616 | 0.74 | 0.099149 |
Target: 5'- gGCCgUGCGGCAGCuuGCaGGcaacGCGCACCAUg -3' miRNA: 3'- -CGG-ACGCCGUCG--CG-CUu---CGCGUGGUA- -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 20427 | 0.75 | 0.082738 |
Target: 5'- cGCCUucgaaaacacguuCGGCGGCGCGAAGCcuGCGCCGg -3' miRNA: 3'- -CGGAc------------GCCGUCGCGCUUCG--CGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 46938 | 0.76 | 0.07468 |
Target: 5'- aGCCUcGCGcGCAGCcaagGCGgcGCGCGCCGa -3' miRNA: 3'- -CGGA-CGC-CGUCG----CGCuuCGCGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 15283 | 0.78 | 0.052919 |
Target: 5'- -gCUGCGGCGGCGCGGucAGCaucaGCACCGg -3' miRNA: 3'- cgGACGCCGUCGCGCU--UCG----CGUGGUa -5' |
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17043 | 5' | -60.6 | NC_004333.2 | + | 6771 | 0.66 | 0.386275 |
Target: 5'- cGCCUcgaGGUAGC-CGAucgcauacgacAGCGCGCCGa -3' miRNA: 3'- -CGGAcg-CCGUCGcGCU-----------UCGCGUGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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