miRNA display CGI


Results 81 - 98 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17043 5' -60.6 NC_004333.2 + 5616 0.74 0.099149
Target:  5'- gGCCgUGCGGCAGCuuGCaGGcaacGCGCACCAUg -3'
miRNA:   3'- -CGG-ACGCCGUCG--CG-CUu---CGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 20427 0.75 0.082738
Target:  5'- cGCCUucgaaaacacguuCGGCGGCGCGAAGCcuGCGCCGg -3'
miRNA:   3'- -CGGAc------------GCCGUCGCGCUUCG--CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 46938 0.76 0.07468
Target:  5'- aGCCUcGCGcGCAGCcaagGCGgcGCGCGCCGa -3'
miRNA:   3'- -CGGA-CGC-CGUCG----CGCuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 15283 0.78 0.052919
Target:  5'- -gCUGCGGCGGCGCGGucAGCaucaGCACCGg -3'
miRNA:   3'- cgGACGCCGUCGCGCU--UCG----CGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 25425 0.7 0.181695
Target:  5'- uGCCgGCGGCGGCcgucacGCcGGGCGUGCCGg -3'
miRNA:   3'- -CGGaCGCCGUCG------CGcUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 28781 0.7 0.183651
Target:  5'- gGUC-GCGGCGGCGCGAcuucccaucgcguauAGUGCGuCCAc -3'
miRNA:   3'- -CGGaCGCCGUCGCGCU---------------UCGCGU-GGUa -5'
17043 5' -60.6 NC_004333.2 + 42097 0.68 0.267986
Target:  5'- -gCUGCgcgacgaGGCGuGuCGCGAGGUGCGCCAg -3'
miRNA:   3'- cgGACG-------CCGU-C-GCGCUUCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 47474 0.68 0.261946
Target:  5'- cGCCgGCGGCGacugccGCGCugaacGAGGCGCcgGCCGg -3'
miRNA:   3'- -CGGaCGCCGU------CGCG-----CUUCGCG--UGGUa -5'
17043 5' -60.6 NC_004333.2 + 36083 0.68 0.261946
Target:  5'- gGCCcGUGacGCGGCGCu--GCGCGCCAg -3'
miRNA:   3'- -CGGaCGC--CGUCGCGcuuCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 25868 0.68 0.261946
Target:  5'- aUCUGCaGCAGCGCuuGGUGCGCgAg -3'
miRNA:   3'- cGGACGcCGUCGCGcuUCGCGUGgUa -5'
17043 5' -60.6 NC_004333.2 + 9177 0.68 0.248284
Target:  5'- cGCUUGCguucguucgcgacGGCAGUGuCGAucgcgguGCGCACCGa -3'
miRNA:   3'- -CGGACG-------------CCGUCGC-GCUu------CGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 2418 0.69 0.242611
Target:  5'- cGCCguacaGCGGCAGCGUGccuugguacGGCGCGgCGa -3'
miRNA:   3'- -CGGa----CGCCGUCGCGCu--------UCGCGUgGUa -5'
17043 5' -60.6 NC_004333.2 + 29874 0.69 0.236435
Target:  5'- ---cGCGGUAGUcgucgGCGAAGCGCugCGc -3'
miRNA:   3'- cggaCGCCGUCG-----CGCUUCGCGugGUa -5'
17043 5' -60.6 NC_004333.2 + 39057 0.69 0.230392
Target:  5'- aGCCgGaCGGCGaguacGCGCGAcucGUGCGCCGUg -3'
miRNA:   3'- -CGGaC-GCCGU-----CGCGCUu--CGCGUGGUA- -5'
17043 5' -60.6 NC_004333.2 + 25932 0.69 0.224479
Target:  5'- aGCUauUGCGcGCGGCGCGAugccGGCG-GCCAg -3'
miRNA:   3'- -CGG--ACGC-CGUCGCGCU----UCGCgUGGUa -5'
17043 5' -60.6 NC_004333.2 + 3989 0.69 0.218125
Target:  5'- -gUUGCGGCGuuuagcugcuGCGUGAccucgaaGGCGCACCAg -3'
miRNA:   3'- cgGACGCCGU----------CGCGCU-------UCGCGUGGUa -5'
17043 5' -60.6 NC_004333.2 + 47825 0.7 0.207511
Target:  5'- cGCCUGCGGaCGGCGCuucuuuggagguGAgcauguggcucGGCGCGCUu- -3'
miRNA:   3'- -CGGACGCC-GUCGCG------------CU-----------UCGCGUGGua -5'
17043 5' -60.6 NC_004333.2 + 33406 0.8 0.037372
Target:  5'- uGCCUGCGGC-GCaGCGAcuGCGCGCCGa -3'
miRNA:   3'- -CGGACGCCGuCG-CGCUu-CGCGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.