miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17044 5' -54.3 NC_004333.2 + 40325 0.66 0.715788
Target:  5'- -gCGAGCuggAAAUGGCCGG-CgcagGcCGCGUc -3'
miRNA:   3'- aaGCUCG---UUUACCGGCUaGa---C-GCGCG- -5'
17044 5' -54.3 NC_004333.2 + 8409 0.66 0.715788
Target:  5'- gUCGAGCAAcGUcGCCGAUacgGUGcCGCc -3'
miRNA:   3'- aAGCUCGUU-UAcCGGCUAga-CGC-GCG- -5'
17044 5' -54.3 NC_004333.2 + 44501 0.66 0.710267
Target:  5'- aUCGcAGCGAAcccggacuggacgccGGCCGAUCaccccgagcacuucGCGCGCa -3'
miRNA:   3'- aAGC-UCGUUUa--------------CCGGCUAGa-------------CGCGCG- -5'
17044 5' -54.3 NC_004333.2 + 27255 0.66 0.704725
Target:  5'- -cCGGGCGucgGGuuGcaaucCUGCGCGCc -3'
miRNA:   3'- aaGCUCGUuuaCCggCua---GACGCGCG- -5'
17044 5' -54.3 NC_004333.2 + 11348 0.66 0.704725
Target:  5'- -cCG-GC-GAUGGCCGua--GCGCGCa -3'
miRNA:   3'- aaGCuCGuUUACCGGCuagaCGCGCG- -5'
17044 5' -54.3 NC_004333.2 + 45954 0.66 0.693587
Target:  5'- gUCGAGCGGAUGuGUCGcggCgagGCGUGg -3'
miRNA:   3'- aAGCUCGUUUAC-CGGCua-Ga--CGCGCg -5'
17044 5' -54.3 NC_004333.2 + 19960 0.66 0.693587
Target:  5'- -gCGAGUGcuuUGcCCGA-CUGCGCGCu -3'
miRNA:   3'- aaGCUCGUuu-ACcGGCUaGACGCGCG- -5'
17044 5' -54.3 NC_004333.2 + 3190 0.66 0.693587
Target:  5'- -gUGAGCAcgaGGCCGGUgagccggccCgGCGCGCc -3'
miRNA:   3'- aaGCUCGUuuaCCGGCUA---------GaCGCGCG- -5'
17044 5' -54.3 NC_004333.2 + 44420 0.66 0.682386
Target:  5'- -cCGGGCucgcUGGCUGG--UGCGUGCg -3'
miRNA:   3'- aaGCUCGuuu-ACCGGCUagACGCGCG- -5'
17044 5' -54.3 NC_004333.2 + 45537 0.66 0.682386
Target:  5'- aUUCGAGCGguGGUGGUCGcUUUGCgaauacucgGUGCu -3'
miRNA:   3'- -AAGCUCGU--UUACCGGCuAGACG---------CGCG- -5'
17044 5' -54.3 NC_004333.2 + 20236 0.66 0.682386
Target:  5'- aUCGAccGCGAcUGGCCuacGAUC-GCGcCGCa -3'
miRNA:   3'- aAGCU--CGUUuACCGG---CUAGaCGC-GCG- -5'
17044 5' -54.3 NC_004333.2 + 27533 0.66 0.671134
Target:  5'- gUCGAucGCAAGUGccgcGCCGGggcgaaUCUGCGCa- -3'
miRNA:   3'- aAGCU--CGUUUAC----CGGCU------AGACGCGcg -5'
17044 5' -54.3 NC_004333.2 + 44153 0.66 0.671134
Target:  5'- cUCGAGU-GGUGGcCCGA-CUGgUGCGCc -3'
miRNA:   3'- aAGCUCGuUUACC-GGCUaGAC-GCGCG- -5'
17044 5' -54.3 NC_004333.2 + 16010 0.66 0.671134
Target:  5'- -gCGAGUAAgcgcGUGGCCGGcCUGCcgacagucgccGCGUu -3'
miRNA:   3'- aaGCUCGUU----UACCGGCUaGACG-----------CGCG- -5'
17044 5' -54.3 NC_004333.2 + 32207 0.66 0.670006
Target:  5'- -aCGAGaaccUGGCCGAcCUGCugaaaguGCGCa -3'
miRNA:   3'- aaGCUCguuuACCGGCUaGACG-------CGCG- -5'
17044 5' -54.3 NC_004333.2 + 10205 0.66 0.666622
Target:  5'- -aCGcGCAugcGGCCGucggcaucaaagCUGCGCGCg -3'
miRNA:   3'- aaGCuCGUuuaCCGGCua----------GACGCGCG- -5'
17044 5' -54.3 NC_004333.2 + 38174 0.67 0.659843
Target:  5'- gUCGcGCAGAcGGCCGAcaaccCGCGCa -3'
miRNA:   3'- aAGCuCGUUUaCCGGCUagac-GCGCG- -5'
17044 5' -54.3 NC_004333.2 + 13883 0.67 0.659843
Target:  5'- -cCGcGCGAAgucGGCCGGcacgggCUGCGCGg -3'
miRNA:   3'- aaGCuCGUUUa--CCGGCUa-----GACGCGCg -5'
17044 5' -54.3 NC_004333.2 + 16747 0.67 0.648525
Target:  5'- gUUGAG-GAAUGGaacgaCGAUCUGCGC-Cg -3'
miRNA:   3'- aAGCUCgUUUACCg----GCUAGACGCGcG- -5'
17044 5' -54.3 NC_004333.2 + 47851 0.67 0.648525
Target:  5'- -gUGAGCAuGUGGCUcg---GCGCGCu -3'
miRNA:   3'- aaGCUCGUuUACCGGcuagaCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.