miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17046 3' -65.8 NC_004333.2 + 22373 0.66 0.248093
Target:  5'- cCGCAcgCGCCGAggaugGCCGuCUGCCaGGUCGa -3'
miRNA:   3'- -GCGUcgGCGGCU-----UGGC-GGCGG-CCGGC- -5'
17046 3' -65.8 NC_004333.2 + 39201 0.66 0.248093
Target:  5'- gGCAGCaCGgcCCGcGCaucCCGUCGGCCGa -3'
miRNA:   3'- gCGUCG-GC--GGCuUGgc-GGCGGCCGGC- -5'
17046 3' -65.8 NC_004333.2 + 6323 0.66 0.246295
Target:  5'- gCGCAGCCGugaggacgaCCGcACCGCgcgauuuuacgaugCGCCGGUa- -3'
miRNA:   3'- -GCGUCGGC---------GGCuUGGCG--------------GCGGCCGgc -5'
17046 3' -65.8 NC_004333.2 + 29804 0.66 0.242143
Target:  5'- aCGaCGGUCaCCGGGCCGUugaugcugauCGCCGcGCCGc -3'
miRNA:   3'- -GC-GUCGGcGGCUUGGCG----------GCGGC-CGGC- -5'
17046 3' -65.8 NC_004333.2 + 29893 0.66 0.242143
Target:  5'- gCGCuGCgCGaUCGGGCCGCgCGCggcauccuCGGCCGc -3'
miRNA:   3'- -GCGuCG-GC-GGCUUGGCG-GCG--------GCCGGC- -5'
17046 3' -65.8 NC_004333.2 + 31372 0.66 0.240381
Target:  5'- aCGCAGCCGCgcguuucgucucauCGAACuccuucuugcgCGCCGCgUGGCg- -3'
miRNA:   3'- -GCGUCGGCG--------------GCUUG-----------GCGGCG-GCCGgc -5'
17046 3' -65.8 NC_004333.2 + 23553 0.66 0.239796
Target:  5'- gCGUAGCUgucgcgaacgcauuGUCGAaagcgaaGCCGCCGCCGaGCa- -3'
miRNA:   3'- -GCGUCGG--------------CGGCU-------UGGCGGCGGC-CGgc -5'
17046 3' -65.8 NC_004333.2 + 26402 0.66 0.236311
Target:  5'- gCGCGGCacuuCGCCGAAUgGCuUGUCGaGCUGg -3'
miRNA:   3'- -GCGUCG----GCGGCUUGgCG-GCGGC-CGGC- -5'
17046 3' -65.8 NC_004333.2 + 2648 0.66 0.236311
Target:  5'- gCGCuuGCCGgCGuaucAGCCGCaaCGCCGGCa- -3'
miRNA:   3'- -GCGu-CGGCgGC----UUGGCG--GCGGCCGgc -5'
17046 3' -65.8 NC_004333.2 + 14399 0.66 0.236311
Target:  5'- gCGCGGUCGCCauGAAggcgaguuucuCgCGCCGCCaGUCGa -3'
miRNA:   3'- -GCGUCGGCGG--CUU-----------G-GCGGCGGcCGGC- -5'
17046 3' -65.8 NC_004333.2 + 13971 0.66 0.236311
Target:  5'- gGCGGCgGCCGGugCGCgcgaGCUGcGCgCGc -3'
miRNA:   3'- gCGUCGgCGGCUugGCGg---CGGC-CG-GC- -5'
17046 3' -65.8 NC_004333.2 + 43307 0.66 0.230598
Target:  5'- gCGCucguGCCGaUCGAGCCGaCGCCGGa-- -3'
miRNA:   3'- -GCGu---CGGC-GGCUUGGCgGCGGCCggc -5'
17046 3' -65.8 NC_004333.2 + 47205 0.66 0.230598
Target:  5'- aGUAGaauCGCCGGAa-GCUGCCGGCa- -3'
miRNA:   3'- gCGUCg--GCGGCUUggCGGCGGCCGgc -5'
17046 3' -65.8 NC_004333.2 + 2919 0.66 0.230598
Target:  5'- gCGCAGCgGUCGuGACCGUCaaCGuGCCGc -3'
miRNA:   3'- -GCGUCGgCGGC-UUGGCGGcgGC-CGGC- -5'
17046 3' -65.8 NC_004333.2 + 30383 0.66 0.230598
Target:  5'- cCGCGauGCCgaacGUCGAagcgACCGgCGCCGGaCCGa -3'
miRNA:   3'- -GCGU--CGG----CGGCU----UGGCgGCGGCC-GGC- -5'
17046 3' -65.8 NC_004333.2 + 31298 0.66 0.230033
Target:  5'- gGCAGUCggccguGCCGAACaGUCGCCcgucgaucgccuuGGCCGc -3'
miRNA:   3'- gCGUCGG------CGGCUUGgCGGCGG-------------CCGGC- -5'
17046 3' -65.8 NC_004333.2 + 47417 0.66 0.225002
Target:  5'- uCGCAGCUaCaucGCCGCuCGCCGGCg- -3'
miRNA:   3'- -GCGUCGGcGgcuUGGCG-GCGGCCGgc -5'
17046 3' -65.8 NC_004333.2 + 5198 0.66 0.225002
Target:  5'- aGC-GCCGCCc-GCuCGuCCGCCGGCg- -3'
miRNA:   3'- gCGuCGGCGGcuUG-GC-GGCGGCCGgc -5'
17046 3' -65.8 NC_004333.2 + 45252 0.66 0.225002
Target:  5'- aGCGGCaCGuuGAcggucacgACCGCUGCgcagcacgucuCGGCCa -3'
miRNA:   3'- gCGUCG-GCggCU--------UGGCGGCG-----------GCCGGc -5'
17046 3' -65.8 NC_004333.2 + 27344 0.66 0.225002
Target:  5'- gCGCGGCCGCCcgucGGGCaggaaGCCGCUacCCGu -3'
miRNA:   3'- -GCGUCGGCGG----CUUGg----CGGCGGccGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.