miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17046 5' -48.8 NC_004333.2 + 36350 0.66 0.956906
Target:  5'- cGCAAGcuGGAGCGcgccGUCGcgcUGAugGCCg -3'
miRNA:   3'- cUGUUCcuCUUCGU----UAGC---ACUugCGG- -5'
17046 5' -48.8 NC_004333.2 + 35286 0.66 0.956906
Target:  5'- aGACGcGGGGAuacaAGgAAUgGUGGcCGCCg -3'
miRNA:   3'- -CUGUuCCUCU----UCgUUAgCACUuGCGG- -5'
17046 5' -48.8 NC_004333.2 + 15076 0.66 0.95247
Target:  5'- uGCAAGGGcgcgacGAAGgGcUCGUGAucACGCUg -3'
miRNA:   3'- cUGUUCCU------CUUCgUuAGCACU--UGCGG- -5'
17046 5' -48.8 NC_004333.2 + 28737 0.67 0.931719
Target:  5'- ----cGGAGGcgcuGGCAcgcgCGUGAACGUCg -3'
miRNA:   3'- cuguuCCUCU----UCGUua--GCACUUGCGG- -5'
17046 5' -48.8 NC_004333.2 + 39343 0.68 0.912924
Target:  5'- aGACAAGGAGAaacAGCAAUgcCGUuucaaaaacaGGucuacaucACGCCg -3'
miRNA:   3'- -CUGUUCCUCU---UCGUUA--GCA----------CU--------UGCGG- -5'
17046 5' -48.8 NC_004333.2 + 15670 0.68 0.912924
Target:  5'- -cCGAGGAGcuucacGAGC-AUCGcGAACGCUu -3'
miRNA:   3'- cuGUUCCUC------UUCGuUAGCaCUUGCGG- -5'
17046 5' -48.8 NC_004333.2 + 41672 0.68 0.906043
Target:  5'- cGGCAAGGAGAAuauccUCGUGcucGACGCg -3'
miRNA:   3'- -CUGUUCCUCUUcguu-AGCAC---UUGCGg -5'
17046 5' -48.8 NC_004333.2 + 688 0.68 0.898859
Target:  5'- uGCucGGuGAGcGCGAUCGUgccgccgcccgcGAGCGCCg -3'
miRNA:   3'- cUGuuCCuCUU-CGUUAGCA------------CUUGCGG- -5'
17046 5' -48.8 NC_004333.2 + 41733 0.68 0.891375
Target:  5'- aACGAGGAGAucggcgcgGGCGAcUCGc--GCGCCg -3'
miRNA:   3'- cUGUUCCUCU--------UCGUU-AGCacuUGCGG- -5'
17046 5' -48.8 NC_004333.2 + 42079 0.69 0.87553
Target:  5'- cGACGAGGAu-AGCG-UCGUGcuGCGCg -3'
miRNA:   3'- -CUGUUCCUcuUCGUuAGCACu-UGCGg -5'
17046 5' -48.8 NC_004333.2 + 20345 0.69 0.858559
Target:  5'- cGACGGGuaccgcGAccGGCu-UCGUGAACGCCg -3'
miRNA:   3'- -CUGUUCcu----CU--UCGuuAGCACUUGCGG- -5'
17046 5' -48.8 NC_004333.2 + 2889 0.69 0.839601
Target:  5'- cGGCGAGGcugauguuggccgAGAcgugcugcgcAGCGGUCGUGAcCGUCa -3'
miRNA:   3'- -CUGUUCC-------------UCU----------UCGUUAGCACUuGCGG- -5'
17046 5' -48.8 NC_004333.2 + 4788 0.7 0.83019
Target:  5'- cGGCAGGGuGAGcccGCGucgCGUGAcgcucauACGCCg -3'
miRNA:   3'- -CUGUUCCuCUU---CGUua-GCACU-------UGCGG- -5'
17046 5' -48.8 NC_004333.2 + 35926 0.7 0.791366
Target:  5'- cGACAGGccGAAGuCAGUCGUcauGAGCGCg -3'
miRNA:   3'- -CUGUUCcuCUUC-GUUAGCA---CUUGCGg -5'
17046 5' -48.8 NC_004333.2 + 40517 0.71 0.759542
Target:  5'- cGGC-AGucGAAGCGGUCGUGAACGa- -3'
miRNA:   3'- -CUGuUCcuCUUCGUUAGCACUUGCgg -5'
17046 5' -48.8 NC_004333.2 + 17706 0.73 0.62274
Target:  5'- cGACAAGGuAGgcGCAGcCGUG-ACGUCg -3'
miRNA:   3'- -CUGUUCC-UCuuCGUUaGCACuUGCGG- -5'
17046 5' -48.8 NC_004333.2 + 26023 1.13 0.002032
Target:  5'- cGACAAGGAGAAGCAAUCGUGAACGCCu -3'
miRNA:   3'- -CUGUUCCUCUUCGUUAGCACUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.