miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17047 3' -53.3 NC_004333.2 + 46945 0.66 0.824591
Target:  5'- cGCGcAGCCaaGGCGGcGCGCGccGACGACAa -3'
miRNA:   3'- cUGC-UUGGg-CUGCC-UGCGC--UUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 15798 0.66 0.815225
Target:  5'- --aGAAcCCCGACGcGGCGCuGAACGuCGu -3'
miRNA:   3'- cugCUU-GGGCUGC-CUGCG-CUUGUuGU- -5'
17047 3' -53.3 NC_004333.2 + 42958 0.66 0.815225
Target:  5'- uGCGcugcAACCCGcacccucgccgGCGGACgaGCGGGCGGCGc -3'
miRNA:   3'- cUGC----UUGGGC-----------UGCCUG--CGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 8376 0.66 0.805661
Target:  5'- cGCGu-UCgGACGGccacaGCGCGAGCGGCGu -3'
miRNA:   3'- cUGCuuGGgCUGCC-----UGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 19119 0.66 0.805661
Target:  5'- aGCGccAACUCGGCGcGAuCGUGGGCGGCGc -3'
miRNA:   3'- cUGC--UUGGGCUGC-CU-GCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 34660 0.66 0.795911
Target:  5'- cGCGAGCaCGuCGGACGgCGAcCAGCu -3'
miRNA:   3'- cUGCUUGgGCuGCCUGC-GCUuGUUGu -5'
17047 3' -53.3 NC_004333.2 + 33400 0.66 0.795911
Target:  5'- cGGCGAugCCuGCGG-CGC-AGCGACu -3'
miRNA:   3'- -CUGCUugGGcUGCCuGCGcUUGUUGu -5'
17047 3' -53.3 NC_004333.2 + 5058 0.66 0.785985
Target:  5'- uGGCcGACgUCGGCGcGGCGCuGAACAGCGu -3'
miRNA:   3'- -CUGcUUG-GGCUGC-CUGCG-CUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 10324 0.66 0.785985
Target:  5'- -uCGGGCUCGAgucCGGACGCGAucGCGu-- -3'
miRNA:   3'- cuGCUUGGGCU---GCCUGCGCU--UGUugu -5'
17047 3' -53.3 NC_004333.2 + 6723 0.66 0.785985
Target:  5'- cAUGGAUCaCGACGGccgacucgcccGCGuCGAGCAGCGc -3'
miRNA:   3'- cUGCUUGG-GCUGCC-----------UGC-GCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 9577 0.66 0.778938
Target:  5'- cGGCGcGCCCGGCuguagcuGGcgcuucacgaugccCGCGAACAGCAg -3'
miRNA:   3'- -CUGCuUGGGCUG-------CCu-------------GCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 43426 0.66 0.775894
Target:  5'- aGACGcucgggucGGgCUGACGGACGCGcGCAucGCGc -3'
miRNA:   3'- -CUGC--------UUgGGCUGCCUGCGCuUGU--UGU- -5'
17047 3' -53.3 NC_004333.2 + 15767 0.66 0.775894
Target:  5'- aGCGAGCUgcGCGaGGCGCGGGcCGACAc -3'
miRNA:   3'- cUGCUUGGgcUGC-CUGCGCUU-GUUGU- -5'
17047 3' -53.3 NC_004333.2 + 25119 0.66 0.775894
Target:  5'- cGGCGAGCaCGGCGG-CGCGcACGuucGCGg -3'
miRNA:   3'- -CUGCUUGgGCUGCCuGCGCuUGU---UGU- -5'
17047 3' -53.3 NC_004333.2 + 20336 0.66 0.775894
Target:  5'- cGGCcGugCCGACGGGuacCGCGAcCGGCu -3'
miRNA:   3'- -CUGcUugGGCUGCCU---GCGCUuGUUGu -5'
17047 3' -53.3 NC_004333.2 + 26874 0.66 0.774876
Target:  5'- uGCGAGCCCGAugucaccuucugcCGGAU-CGAgcACAACGg -3'
miRNA:   3'- cUGCUUGGGCU-------------GCCUGcGCU--UGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 14165 0.67 0.769765
Target:  5'- uGACGAccgGCCCGAugccgggucgcucguCgGGAUGCG-GCAGCAu -3'
miRNA:   3'- -CUGCU---UGGGCU---------------G-CCUGCGCuUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 38934 0.67 0.76565
Target:  5'- aGACGAACCaCGACGcGAC-CGG-CAAUc -3'
miRNA:   3'- -CUGCUUGG-GCUGC-CUGcGCUuGUUGu -5'
17047 3' -53.3 NC_004333.2 + 25200 0.67 0.76565
Target:  5'- cGGCGAccgguACCgCGACGcugccGGCgGCGAACAGCu -3'
miRNA:   3'- -CUGCU-----UGG-GCUGC-----CUG-CGCUUGUUGu -5'
17047 3' -53.3 NC_004333.2 + 44947 0.67 0.755265
Target:  5'- aGAUGcuGCCCGGCGucaucGGgGCGGGCGGCGc -3'
miRNA:   3'- -CUGCu-UGGGCUGC-----CUgCGCUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.