miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17047 3' -53.3 NC_004333.2 + 25572 1.09 0.001621
Target:  5'- cGACGAACCCGACGGACGCGAACAACAc -3'
miRNA:   3'- -CUGCUUGGGCUGCCUGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 7683 0.8 0.157965
Target:  5'- cGGCGAACCCGaccacggcgucguaGCGGugaucgGCGCGGACAGCGa -3'
miRNA:   3'- -CUGCUUGGGC--------------UGCC------UGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 38746 0.76 0.272616
Target:  5'- cGGCGAACCgGACGG-CGUGcGCAGCc -3'
miRNA:   3'- -CUGCUUGGgCUGCCuGCGCuUGUUGu -5'
17047 3' -53.3 NC_004333.2 + 20889 0.74 0.36751
Target:  5'- cGACGAGCCCGGCGcaGCGCGuGCuACu -3'
miRNA:   3'- -CUGCUUGGGCUGCc-UGCGCuUGuUGu -5'
17047 3' -53.3 NC_004333.2 + 17484 0.74 0.376373
Target:  5'- gGACGAAguugccgcCgCCGGCGGcgGCGCGAACGGCu -3'
miRNA:   3'- -CUGCUU--------G-GGCUGCC--UGCGCUUGUUGu -5'
17047 3' -53.3 NC_004333.2 + 19621 0.73 0.403812
Target:  5'- cGGCGAGCgCGGCGaGCGCGGcCGACGc -3'
miRNA:   3'- -CUGCUUGgGCUGCcUGCGCUuGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 18601 0.73 0.422793
Target:  5'- cGACcGGCgCGGCaGGCGCGGGCGGCAa -3'
miRNA:   3'- -CUGcUUGgGCUGcCUGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 28238 0.72 0.429561
Target:  5'- cGACGGcggcucgccGCCCGGCGcgcucgucgucgauGAUGCGGACGGCGc -3'
miRNA:   3'- -CUGCU---------UGGGCUGC--------------CUGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 41303 0.72 0.431507
Target:  5'- cGACGAGgCCGAgcucgccCGGcGCGCGAugGACGu -3'
miRNA:   3'- -CUGCUUgGGCU-------GCC-UGCGCUugUUGU- -5'
17047 3' -53.3 NC_004333.2 + 48082 0.72 0.432481
Target:  5'- -uCGGugCCGACGaGGCGCaGGCGGCAa -3'
miRNA:   3'- cuGCUugGGCUGC-CUGCGcUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 9471 0.72 0.442299
Target:  5'- aGGCGAGCgCCGGCGGcUGCGGgaauuucagcGCGGCGg -3'
miRNA:   3'- -CUGCUUG-GGCUGCCuGCGCU----------UGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 18890 0.72 0.452241
Target:  5'- -cCGGAUCgCGAUGGACGCGAucaaaGCGGCu -3'
miRNA:   3'- cuGCUUGG-GCUGCCUGCGCU-----UGUUGu -5'
17047 3' -53.3 NC_004333.2 + 8050 0.72 0.462304
Target:  5'- cGACGAGCUCGGCGGccuucauCG-GGGCGACGa -3'
miRNA:   3'- -CUGCUUGGGCUGCCu------GCgCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 35679 0.72 0.472483
Target:  5'- gGACG-GCCCGuaugccggcaaGCuGGACGCGAAUGACGa -3'
miRNA:   3'- -CUGCuUGGGC-----------UG-CCUGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 45725 0.72 0.482775
Target:  5'- -uCGAGCCCGGCGcGAacgugccgauCGCGAuauACGACAa -3'
miRNA:   3'- cuGCUUGGGCUGC-CU----------GCGCU---UGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 19932 0.72 0.482775
Target:  5'- cGACGAGCgCGcCGGGCgGCGAGCcGCc -3'
miRNA:   3'- -CUGCUUGgGCuGCCUG-CGCUUGuUGu -5'
17047 3' -53.3 NC_004333.2 + 35793 0.71 0.493173
Target:  5'- uGGCGcGCCgGGCgGGGCGCGGGCGGg- -3'
miRNA:   3'- -CUGCuUGGgCUG-CCUGCGCUUGUUgu -5'
17047 3' -53.3 NC_004333.2 + 18502 0.71 0.503672
Target:  5'- -cCGGcACgCCGACGGACGCu-GCAGCGg -3'
miRNA:   3'- cuGCU-UG-GGCUGCCUGCGcuUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 39219 0.7 0.579483
Target:  5'- cACGAuccaGCCCG-CGcACGCGAugGACAg -3'
miRNA:   3'- cUGCU----UGGGCuGCcUGCGCUugUUGU- -5'
17047 3' -53.3 NC_004333.2 + 10781 0.7 0.590556
Target:  5'- cGCGAGCgCCGACguaGGACGaugaGGACGGCc -3'
miRNA:   3'- cUGCUUG-GGCUG---CCUGCg---CUUGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.