miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17047 3' -53.3 NC_004333.2 + 8135 0.67 0.755265
Target:  5'- cGACGAGCCCGuCGacGACagGUGuGGCGACAg -3'
miRNA:   3'- -CUGCUUGGGCuGC--CUG--CGC-UUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 13627 0.67 0.75422
Target:  5'- cGGCGAGCacuucgugcaUCGcGCGGuacucgggcagcuGCGCGAGCAGCAc -3'
miRNA:   3'- -CUGCUUG----------GGC-UGCC-------------UGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 31623 0.67 0.744751
Target:  5'- cGAC-AGCgUGACGGACGcCGGGCAGu- -3'
miRNA:   3'- -CUGcUUGgGCUGCCUGC-GCUUGUUgu -5'
17047 3' -53.3 NC_004333.2 + 22455 0.67 0.744751
Target:  5'- uGGCGAccuGCCCGA-GGcuCGUGAACAugGu -3'
miRNA:   3'- -CUGCU---UGGGCUgCCu-GCGCUUGUugU- -5'
17047 3' -53.3 NC_004333.2 + 39859 0.67 0.744751
Target:  5'- aGACGAACCCcauGACGGcgccguACGUGccGCAACc -3'
miRNA:   3'- -CUGCUUGGG---CUGCC------UGCGCu-UGUUGu -5'
17047 3' -53.3 NC_004333.2 + 6024 0.67 0.73412
Target:  5'- gGACGcuguuGCCCu-CGGGCGUGAGCGuCAu -3'
miRNA:   3'- -CUGCu----UGGGcuGCCUGCGCUUGUuGU- -5'
17047 3' -53.3 NC_004333.2 + 15269 0.67 0.73412
Target:  5'- cGACGAuuuGCCgugcugCGGCGG-CGCGGuCAGCAu -3'
miRNA:   3'- -CUGCU---UGG------GCUGCCuGCGCUuGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 37689 0.67 0.73412
Target:  5'- cGGCcGGCCCGGCGcGugGCGGcuCAAUg -3'
miRNA:   3'- -CUGcUUGGGCUGC-CugCGCUu-GUUGu -5'
17047 3' -53.3 NC_004333.2 + 7358 0.67 0.733051
Target:  5'- cGACGuucuGCUugaucagcuccauCGACGGG-GCGAGCGACAu -3'
miRNA:   3'- -CUGCu---UGG-------------GCUGCCUgCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 44382 0.67 0.723383
Target:  5'- uGCGcuGCUCGGCGGcgcguGCGCGGuACAACGg -3'
miRNA:   3'- cUGCu-UGGGCUGCC-----UGCGCU-UGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 24653 0.67 0.723383
Target:  5'- cGGCGGcuACCCGAaaGGCGCGGuGCuGCAa -3'
miRNA:   3'- -CUGCU--UGGGCUgcCUGCGCU-UGuUGU- -5'
17047 3' -53.3 NC_004333.2 + 23746 0.67 0.720144
Target:  5'- aACGGgcaGCUCGACGcGcgacgagucguucuGCGCGAACGGCAc -3'
miRNA:   3'- cUGCU---UGGGCUGC-C--------------UGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 19190 0.68 0.712554
Target:  5'- cACGccGACCCGGCGGcCGC--GCAACu -3'
miRNA:   3'- cUGC--UUGGGCUGCCuGCGcuUGUUGu -5'
17047 3' -53.3 NC_004333.2 + 39720 0.68 0.712554
Target:  5'- uACGAAaauCCUGugGGACGUGGugGccggGCAg -3'
miRNA:   3'- cUGCUU---GGGCugCCUGCGCUugU----UGU- -5'
17047 3' -53.3 NC_004333.2 + 37971 0.68 0.712554
Target:  5'- -uUGAugCCGACGGccgcauGCGCGugcGCGACu -3'
miRNA:   3'- cuGCUugGGCUGCC------UGCGCu--UGUUGu -5'
17047 3' -53.3 NC_004333.2 + 38813 0.68 0.701642
Target:  5'- aACGAggaagaagGCCCGACGccGCGCGccGACGACGa -3'
miRNA:   3'- cUGCU--------UGGGCUGCc-UGCGC--UUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 17431 0.68 0.690661
Target:  5'- uGACGAucaaaacgucGCCCGGgcacCGGAUGUGGcGCAACGc -3'
miRNA:   3'- -CUGCU----------UGGGCU----GCCUGCGCU-UGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 27610 0.68 0.690661
Target:  5'- cGGCGcGACCCGACGcGcCGaCGAuCAGCGg -3'
miRNA:   3'- -CUGC-UUGGGCUGC-CuGC-GCUuGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 31924 0.68 0.679622
Target:  5'- uGACGAgugugACUCGAUcGACGaCGGGCGACGc -3'
miRNA:   3'- -CUGCU-----UGGGCUGcCUGC-GCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 24227 0.68 0.668537
Target:  5'- -cCGcACCCGGCGGGCaCGAACccGCAc -3'
miRNA:   3'- cuGCuUGGGCUGCCUGcGCUUGu-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.