miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17047 3' -53.3 NC_004333.2 + 3771 0.69 0.657417
Target:  5'- aGCGAGCCCGGCaGGccguuguaccGCGCacgcgccgccGAGCAGCGc -3'
miRNA:   3'- cUGCUUGGGCUG-CC----------UGCG----------CUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 5058 0.66 0.785985
Target:  5'- uGGCcGACgUCGGCGcGGCGCuGAACAGCGu -3'
miRNA:   3'- -CUGcUUG-GGCUGC-CUGCG-CUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 6024 0.67 0.73412
Target:  5'- gGACGcuguuGCCCu-CGGGCGUGAGCGuCAu -3'
miRNA:   3'- -CUGCu----UGGGcuGCCUGCGCUUGUuGU- -5'
17047 3' -53.3 NC_004333.2 + 6723 0.66 0.785985
Target:  5'- cAUGGAUCaCGACGGccgacucgcccGCGuCGAGCAGCGc -3'
miRNA:   3'- cUGCUUGG-GCUGCC-----------UGC-GCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 7358 0.67 0.733051
Target:  5'- cGACGuucuGCUugaucagcuccauCGACGGG-GCGAGCGACAu -3'
miRNA:   3'- -CUGCu---UGG-------------GCUGCCUgCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 7683 0.8 0.157965
Target:  5'- cGGCGAACCCGaccacggcgucguaGCGGugaucgGCGCGGACAGCGa -3'
miRNA:   3'- -CUGCUUGGGC--------------UGCC------UGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 8050 0.72 0.462304
Target:  5'- cGACGAGCUCGGCGGccuucauCG-GGGCGACGa -3'
miRNA:   3'- -CUGCUUGGGCUGCCu------GCgCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 8135 0.67 0.755265
Target:  5'- cGACGAGCCCGuCGacGACagGUGuGGCGACAg -3'
miRNA:   3'- -CUGCUUGGGCuGC--CUG--CGC-UUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 8376 0.66 0.805661
Target:  5'- cGCGu-UCgGACGGccacaGCGCGAGCGGCGu -3'
miRNA:   3'- cUGCuuGGgCUGCC-----UGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 9471 0.72 0.442299
Target:  5'- aGGCGAGCgCCGGCGGcUGCGGgaauuucagcGCGGCGg -3'
miRNA:   3'- -CUGCUUG-GGCUGCCuGCGCU----------UGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 9577 0.66 0.778938
Target:  5'- cGGCGcGCCCGGCuguagcuGGcgcuucacgaugccCGCGAACAGCAg -3'
miRNA:   3'- -CUGCuUGGGCUG-------CCu-------------GCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 9804 0.69 0.646272
Target:  5'- cGGCGcACCCGAC--ACGCG-ACAGCGc -3'
miRNA:   3'- -CUGCuUGGGCUGccUGCGCuUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 10324 0.66 0.785985
Target:  5'- -uCGGGCUCGAgucCGGACGCGAucGCGu-- -3'
miRNA:   3'- cuGCUUGGGCU---GCCUGCGCU--UGUugu -5'
17047 3' -53.3 NC_004333.2 + 10781 0.7 0.590556
Target:  5'- cGCGAGCgCCGACguaGGACGaugaGGACGGCc -3'
miRNA:   3'- cUGCUUG-GGCUG---CCUGCg---CUUGUUGu -5'
17047 3' -53.3 NC_004333.2 + 13627 0.67 0.75422
Target:  5'- cGGCGAGCacuucgugcaUCGcGCGGuacucgggcagcuGCGCGAGCAGCAc -3'
miRNA:   3'- -CUGCUUG----------GGC-UGCC-------------UGCGCUUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 14165 0.67 0.769765
Target:  5'- uGACGAccgGCCCGAugccgggucgcucguCgGGAUGCG-GCAGCAu -3'
miRNA:   3'- -CUGCU---UGGGCU---------------G-CCUGCGCuUGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 15269 0.67 0.73412
Target:  5'- cGACGAuuuGCCgugcugCGGCGG-CGCGGuCAGCAu -3'
miRNA:   3'- -CUGCU---UGG------GCUGCCuGCGCUuGUUGU- -5'
17047 3' -53.3 NC_004333.2 + 15767 0.66 0.775894
Target:  5'- aGCGAGCUgcGCGaGGCGCGGGcCGACAc -3'
miRNA:   3'- cUGCUUGGgcUGC-CUGCGCUU-GUUGU- -5'
17047 3' -53.3 NC_004333.2 + 15798 0.66 0.815225
Target:  5'- --aGAAcCCCGACGcGGCGCuGAACGuCGu -3'
miRNA:   3'- cugCUU-GGGCUGC-CUGCG-CUUGUuGU- -5'
17047 3' -53.3 NC_004333.2 + 17040 0.69 0.601665
Target:  5'- cGGCGAugcAUUCGcCGGgcucgcGCGCGAGCAGCAa -3'
miRNA:   3'- -CUGCU---UGGGCuGCC------UGCGCUUGUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.