miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17049 5' -63.2 NC_004333.2 + 13351 0.66 0.296494
Target:  5'- -uCGGCacGGUGUacGGGCGcGGCacgagcGGCGUGUc -3'
miRNA:   3'- cuGCCG--UCACG--UCCGC-CCG------CCGCACA- -5'
17049 5' -63.2 NC_004333.2 + 17853 0.66 0.282436
Target:  5'- uGCGGCcGcGCGuauGGCGGGUGGUGUc- -3'
miRNA:   3'- cUGCCGuCaCGU---CCGCCCGCCGCAca -5'
17049 5' -63.2 NC_004333.2 + 44938 0.67 0.239792
Target:  5'- aGAuCGuGCAGaUGCugcccggcgucaucgGGGCGGGCGGCGc-- -3'
miRNA:   3'- -CU-GC-CGUC-ACG---------------UCCGCCCGCCGCaca -5'
17049 5' -63.2 NC_004333.2 + 35802 0.67 0.237389
Target:  5'- --gGGCGGggcGCGGGCGGGCgcuacGGCGc-- -3'
miRNA:   3'- cugCCGUCa--CGUCCGCCCG-----CCGCaca -5'
17049 5' -63.2 NC_004333.2 + 38710 0.68 0.222254
Target:  5'- cGGCGGCGGUGCGGcacccgcgccugguGCGcaggacggcgaaccGGaCGGCGUGc -3'
miRNA:   3'- -CUGCCGUCACGUC--------------CGC--------------CC-GCCGCACa -5'
17049 5' -63.2 NC_004333.2 + 26570 0.68 0.216655
Target:  5'- uGCGGCgGGUugcucuuugucaaauGCGGGCGGGCGucGCGUa- -3'
miRNA:   3'- cUGCCG-UCA---------------CGUCCGCCCGC--CGCAca -5'
17049 5' -63.2 NC_004333.2 + 18608 0.68 0.20902
Target:  5'- cGCGGCAG-GC--GCGGGCGGCa--- -3'
miRNA:   3'- cUGCCGUCaCGucCGCCCGCCGcaca -5'
17049 5' -63.2 NC_004333.2 + 8979 0.69 0.169728
Target:  5'- cGugGGCcGUGCGcGGCGGcgaccgacGCGGCGUu- -3'
miRNA:   3'- -CugCCGuCACGU-CCGCC--------CGCCGCAca -5'
17049 5' -63.2 NC_004333.2 + 18539 0.69 0.160994
Target:  5'- cGGCGGCaacccgGGUGCGgcagccGGCGcGGCGGCGa-- -3'
miRNA:   3'- -CUGCCG------UCACGU------CCGC-CCGCCGCaca -5'
17049 5' -63.2 NC_004333.2 + 25730 0.71 0.129985
Target:  5'- -cCGGcCAGcUGCAGGCcGGuCGGCGUGa -3'
miRNA:   3'- cuGCC-GUC-ACGUCCGcCC-GCCGCACa -5'
17049 5' -63.2 NC_004333.2 + 9297 0.75 0.061733
Target:  5'- aGCGGCgcgGGUGCGcGGaCGGGCGGCGUu- -3'
miRNA:   3'- cUGCCG---UCACGU-CC-GCCCGCCGCAca -5'
17049 5' -63.2 NC_004333.2 + 17019 0.78 0.034097
Target:  5'- gGGCGGCGaUGCcaAGGCGGGCGGCGa-- -3'
miRNA:   3'- -CUGCCGUcACG--UCCGCCCGCCGCaca -5'
17049 5' -63.2 NC_004333.2 + 25158 1.06 0.000238
Target:  5'- uGACGGCAGUGCAGGCGGGCGGCGUGUu -3'
miRNA:   3'- -CUGCCGUCACGUCCGCCCGCCGCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.