miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17050 3' -56.2 NC_004333.2 + 7991 0.66 0.614204
Target:  5'- cGGCucugcGGUGAUGaacgccGCgACCAGCGUCGUCc -3'
miRNA:   3'- aUCGc----CCGCUAC------CG-UGGUUGUAGCAG- -5'
17050 3' -56.2 NC_004333.2 + 6930 0.66 0.601909
Target:  5'- aGGCGuGCGcgGGCGCCAGucgaagccugaacCAUCGa- -3'
miRNA:   3'- aUCGCcCGCuaCCGUGGUU-------------GUAGCag -5'
17050 3' -56.2 NC_004333.2 + 1511 0.66 0.580755
Target:  5'- gAGCGacGGCGAgucGGcCugCAGCGugaUCGUCa -3'
miRNA:   3'- aUCGC--CCGCUa--CC-GugGUUGU---AGCAG- -5'
17050 3' -56.2 NC_004333.2 + 28769 0.66 0.569682
Target:  5'- gUAGCGcGGCGuaggcguaGcGCAUCAGCAgaaUCGUCa -3'
miRNA:   3'- -AUCGC-CCGCua------C-CGUGGUUGU---AGCAG- -5'
17050 3' -56.2 NC_004333.2 + 3324 0.67 0.548795
Target:  5'- -cGCGcGGCGAUcuucuucagcgucucGCgGCCAGCGUCGUCc -3'
miRNA:   3'- auCGC-CCGCUAc--------------CG-UGGUUGUAGCAG- -5'
17050 3' -56.2 NC_004333.2 + 11886 0.67 0.536811
Target:  5'- gGGCGGcGCGuaucgcAUGGCGCagGACGUCG-Cg -3'
miRNA:   3'- aUCGCC-CGC------UACCGUGg-UUGUAGCaG- -5'
17050 3' -56.2 NC_004333.2 + 47481 0.67 0.536811
Target:  5'- -cGCGGGCGgcGGCAC-GAUcgCGcUCa -3'
miRNA:   3'- auCGCCCGCuaCCGUGgUUGuaGC-AG- -5'
17050 3' -56.2 NC_004333.2 + 41984 0.67 0.536811
Target:  5'- -uGCGGGCGAccGCGCCAagGCuuccUGUCg -3'
miRNA:   3'- auCGCCCGCUacCGUGGU--UGua--GCAG- -5'
17050 3' -56.2 NC_004333.2 + 13436 0.67 0.525996
Target:  5'- -cGCGGGCGgcGuCACgucaacuaagggCGGCAUCGUCg -3'
miRNA:   3'- auCGCCCGCuaCcGUG------------GUUGUAGCAG- -5'
17050 3' -56.2 NC_004333.2 + 21474 0.67 0.515264
Target:  5'- cGGCGcGGCG--GGCAUCGACAUCc-- -3'
miRNA:   3'- aUCGC-CCGCuaCCGUGGUUGUAGcag -5'
17050 3' -56.2 NC_004333.2 + 32286 0.67 0.504622
Target:  5'- -cGCGGGuCGgcGGCGaugUCGACGUgCGUCa -3'
miRNA:   3'- auCGCCC-GCuaCCGU---GGUUGUA-GCAG- -5'
17050 3' -56.2 NC_004333.2 + 27666 0.67 0.504622
Target:  5'- gAGCGGcGCGgcGGCGgCCGGCAgCGg- -3'
miRNA:   3'- aUCGCC-CGCuaCCGU-GGUUGUaGCag -5'
17050 3' -56.2 NC_004333.2 + 10961 0.67 0.501447
Target:  5'- -uGCGGGCcacagcgucgcgcgGAacucGGCACCGGCGcgCGUCg -3'
miRNA:   3'- auCGCCCG--------------CUa---CCGUGGUUGUa-GCAG- -5'
17050 3' -56.2 NC_004333.2 + 44968 0.68 0.473294
Target:  5'- gGGCGGGCGGcgcgccgGGCcggcucACCGGCcUCGUg -3'
miRNA:   3'- aUCGCCCGCUa------CCG------UGGUUGuAGCAg -5'
17050 3' -56.2 NC_004333.2 + 46434 0.69 0.432136
Target:  5'- gGGC-GGCGAguguccGGUACCAGCGgacacgcUCGUCg -3'
miRNA:   3'- aUCGcCCGCUa-----CCGUGGUUGU-------AGCAG- -5'
17050 3' -56.2 NC_004333.2 + 35813 0.69 0.423382
Target:  5'- gGGCGGGCGcuacGGCGCCcccGAC--CGUCg -3'
miRNA:   3'- aUCGCCCGCua--CCGUGG---UUGuaGCAG- -5'
17050 3' -56.2 NC_004333.2 + 28936 0.69 0.413783
Target:  5'- gUAGCGGGCGccgaGGCAC--GCGUUGUUc -3'
miRNA:   3'- -AUCGCCCGCua--CCGUGguUGUAGCAG- -5'
17050 3' -56.2 NC_004333.2 + 18359 0.69 0.413783
Target:  5'- cGGCGcGGCGAUcaGCAUCAACggcccggugaccGUCGUCg -3'
miRNA:   3'- aUCGC-CCGCUAc-CGUGGUUG------------UAGCAG- -5'
17050 3' -56.2 NC_004333.2 + 16537 0.69 0.41283
Target:  5'- -cGCGaGCGGUGGCGcaacugcCCGGCGUcCGUCa -3'
miRNA:   3'- auCGCcCGCUACCGU-------GGUUGUA-GCAG- -5'
17050 3' -56.2 NC_004333.2 + 45125 0.7 0.37676
Target:  5'- -uGCGcGGCGAUcGCGCCuACcuGUCGUCg -3'
miRNA:   3'- auCGC-CCGCUAcCGUGGuUG--UAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.